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Assay category
5
DNA accessibility
Assay
1760
ChIP-seq
1387
total RNA-seq
488
ATAC-seq
360
single cell RNA-seq
208
DNase-seq
84
snATAC-seq
75
WGBS
48
pCHi-C
25
Hi-C
19
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Project
5
AMP
2
T1D
RFA
5
AMP
2
T1D
Experiment status
7
released
Genome assembly (visualization)
5
hg19
Organism
7
Homo sapiens
Biosample type
4
tissue
2
cell line
1
primary cell
Organ
2
pancreas
1
blood vessel
1
brain
1
epithelium
1
kidney
1
vasculature
1
vein
Life stage
3
adult
3
unknown
1
newborn
Available data
5
bam
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
2
fastq
1
tar
Platform
2
Illumina Genome Analyzer I
Run type
2
single-ended
Read length (nt)
1
35
1
50
Library made from
7
DNA
Date released
2
February, 2023
2
July, 2019
1
August, 2017
1
November, 2018
1
October, 2019
Lab
5
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Replication type
3
anisogenic
3
unreplicated
1
isogenic
audit.ERROR.category!
inconsistent ontology term
lab.title!
Bing Ren, UCSD
month_released!
December, 2018
Showing 7 of 7 results
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Experiment
DSR498QQL
released
HiChIP
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
Kyle Gaulton, UCSD
Project:
T1D
Experiment
DSR895OVT
released
HiChIP
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
Kyle Gaulton, UCSD
Project:
T1D
Experiment
DSR024UHG
released
FAIRE-seq
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein newborn
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR821PLA
released
FAIRE-seq
of kidney
Homo sapiens
kidney female adult (30 years) and male adult (54 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR405QWU
released
FAIRE-seq
of frontal cortex
Homo sapiens
frontal cortex female adult (67 years) and female adult (80 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR803CTG
released
FAIRE-seq
of pancreas
Homo sapiens
pancreas adult (54 years) and adult (60 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR121227
released
FAIRE-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male (53 years)
Lab:
AMP-T2D consortium
Project:
AMP