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Schema
Citing CMDGA
Clear Filters
Assay category
3
DNA accessibility
Assay
1863
ChIP-seq
938
total RNA-seq
503
ATAC-seq
348
single cell RNA-seq
212
DNase-seq
57
WGBS
57
snATAC-seq
53
pCHi-C
26
Hi-C
10
MeRIP-seq
6
RRBS
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
RNA microarray
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
3
hg19
Organism
5
Homo sapiens
Biosample type
5
tissue
1
primary cell
Organ
2
epithelium
2
kidney
2
pancreas
1
adipose tissue
1
blood vessel
1
connective tissue
1
vasculature
1
vein
Life stage
3
unknown
1
adult
1
newborn
Available data
3
bam
3
bed narrowPeak
3
bigBed narrowPeak
3
bigWig
2
fastq
2
tsv
1
tar
Platform
2
Illumina Genome Analyzer I
Run type
2
single-ended
Read length (nt)
1
35
1
50
Library made from
3
DNA
2
RNA
Date released
February, 2021
2
December, 2019
July, 2019
1
August, 2017
1
August, 2021
1
November, 2018
1
October, 2019
Lab
6
AMP-T2D consortium
Replication type
4
unreplicated
1
anisogenic
1
isogenic
Audit category:
2
audit script error
month_released!
February, 2021
July, 2019
organ_slims!
intestine
Showing 6 of 6 results
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Experiment
DSR795DZU
released
RNA microarray
of subcutaneous adipose tissue
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR479AEW
released
Audit error
1
RNA microarray
of kidney interstitium
Homo sapiens
kidney interstitium
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR187TER
released
Audit error
1
RNA microarray
of renal glomerulus
Homo sapiens
renal glomerulus
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR024UHG
released
FAIRE-seq
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein newborn
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR803CTG
released
FAIRE-seq
of pancreas
Homo sapiens
pancreas adult (54 years) and adult (60 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR121227
released
FAIRE-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male (53 years)
Lab:
AMP-T2D consortium
Project:
AMP