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Citing CMDGA
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Assay category
2
DNA accessibility
Assay
437
ChIP-seq
232
total RNA-seq
134
single cell RNA-seq
61
ATAC-seq
27
snATAC-seq
16
WGBS
12
DNase-seq
5
GRO-seq
4
RRBS
2
FAIRE-seq
1
pCHi-C
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
2
hg19
Organism
3
Homo sapiens
Biosample type
2
tissue
1
in vitro differentiated cells
Organ
2
pancreas
1
adipose tissue
1
connective tissue
Life stage
2
unknown
1
adult
Available data
26
tsv
6
bam
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
3
bedpe bed3+
3
fastq
2
ibed
1
bed bed3+
1
tar
Platform
2
Illumina Genome Analyzer I
1
Illumina HiSeq 4000
Run type
2
single-ended
1
paired-ended
Read length (nt)
1
35
1
50
1
69
Library made from
3
DNA
Date released
1
August, 2017
1
August, 2018
1
November, 2018
Lab
3
AMP-T2D consortium
Replication type
2
unreplicated
1
anisogenic
biosample_type!
cell line
Showing 3 of 3 results
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Experiment
TSTSR803CTG
released
FAIRE-seq
of pancreas
Homo sapiens
pancreas adult (54 years) and adult (60 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR423QSN
released
pCHi-C
of white fat cell
Homo sapiens
white adipose cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR121227
released
FAIRE-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male (53 years)
Lab:
AMP-T2D consortium
Project:
AMP