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Assay category
3
DNA accessibility
Assay
1536
ChIP-seq
1479
total RNA-seq
513
ATAC-seq
366
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
63
WGBS
57
pCHi-C
26
Hi-C
6
RRBS
5
GRO-seq
5
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
tissue
1
primary cell
Organ
2
pancreas
1
blood vessel
1
epithelium
1
vasculature
1
vein
Life stage
1
adult
1
newborn
1
unknown
Available data
3
bam
3
bed narrowPeak
3
bigBed narrowPeak
3
bigWig
2
fastq
1
tar
Platform
2
Illumina Genome Analyzer I
Run type
2
single-ended
Read length (nt)
1
35
1
50
Library made from
3
DNA
Date released
July, 2019
1
August, 2017
1
November, 2018
1
October, 2019
Lab
3
AMP-T2D consortium
Replication type
1
anisogenic
1
isogenic
1
unreplicated
month_released!
July, 2019
organ_slims!
skeleton
target.investigated_as!
control
Showing 3 of 3 results
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Experiment
DSR024UHG
released
FAIRE-seq
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein newborn
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR803CTG
released
FAIRE-seq
of pancreas
Homo sapiens
pancreas adult (54 years) and adult (60 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR121227
released
FAIRE-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male (53 years)
Lab:
AMP-T2D consortium
Project:
AMP