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Assay category
2
DNA accessibility
Assay
1690
ChIP-seq
1337
total RNA-seq
426
ATAC-seq
280
single cell RNA-seq
185
DNase-seq
87
RNA microarray
79
snATAC-seq
75
WGBS
29
pCHi-C
25
Hi-C
21
RRBS
7
small RNA-seq
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
snDrop-seq
1
whole genome sequencing assay
Project
2
AMP
RFA
2
AMP
Experiment status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
1
primary cell
1
tissue
Organ
1
blood vessel
1
epithelium
1
pancreas
1
vasculature
1
vein
Life stage
1
newborn
1
unknown
Available data
2
bam
2
bed narrowPeak
2
bigBed narrowPeak
2
bigWig
1
fastq
1
tar
Platform
1
Illumina Genome Analyzer I
Run type
1
single-ended
Read length (nt)
1
35
Library made from
2
DNA
Date released
1
August, 2017
1
October, 2019
Lab
2
AMP-T2D consortium
Replication type
anisogenic
1
isogenic
1
unreplicated
replication_type!
anisogenic
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Experiment
DSR024UHG
released
FAIRE-seq
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein newborn
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR121227
released
FAIRE-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male (53 years)
Lab:
AMP-T2D consortium
Project:
AMP