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Assay
1673
ChIP-seq
1391
total RNA-seq
487
ATAC-seq
367
single cell RNA-seq
211
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
52
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Genome assembly (visualization)
1
hg18
Organism
4
Homo sapiens
Biosample type
in vitro differentiated cells
3
tissue
1
stem cell
Organ
3
kidney
Life stage
3
adult
2
unknown
Available data
3
tsv
1
bigWig
1
fastq
Platform
1
Illumina HiSeq 2500
Run type
1
single-ended
Read length (nt)
1
50
Library made from
3
RNA
1
DNA
Date released
3
February, 2021
1
January, 2018
Lab
4
AMP-T2D consortium
Replication type
2
anisogenic
2
unreplicated
audit.ERROR.category!
inconsistent replicate
biosample_type!
in vitro differentiated cells
lab.title!
Maike Sander, UCSD
Showing 4 of 4 results
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Experiment
DSR983MYO
released
snDrop-seq
of kidney (medulla)
Homo sapiens
kidney male adult
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR718NCQ
released
snDrop-seq
of kidney (Cortex-Medulla)
Homo sapiens
kidney male adult
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR684WPX
released
snDrop-seq
of kidney (cortex)
Homo sapiens
kidney NONE and female adult and male adult
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR770475
released
GRO-seq
of hESC
Homo sapiens
hESC (embryoid body cell)
Lab:
AMP-T2D consortium
Project:
AMP