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Assay
1197
total RNA-seq
868
ChIP-seq
331
ATAC-seq
274
single cell RNA-seq
162
DNase-seq
87
RNA microarray
72
snATAC-seq
58
WGBS
15
Hi-C
8
pCHi-C
7
small RNA-seq
5
GRO-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
STARR-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
snDrop-seq
1
whole genome sequencing assay
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
5
hg18
Organism
6
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
stem cell
1
tissue
Organ
1
embryo
1
kidney
Life stage
5
unknown
1
adult
Available data
5
bigWig
5
fastq
1
tsv
Platform
5
Illumina HiSeq 2500
Run type
5
single-ended
Read length (nt)
5
50
Library made from
5
DNA
1
RNA
Date released
5
January, 2018
1
February, 2021
Lab
6
AMP-T2D consortium
Replication type
6
unreplicated
2
anisogenic
month_released!
August, 2017
Showing 6 of 6 results
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Experiment
DSR718NCQ
released
snDrop-seq
of kidney (Cortex-Medulla)
Homo sapiens
kidney male adult
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR520547
released
GRO-seq
of Posterior foregut
Homo sapiens
Posterior foregut
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR171680
released
GRO-seq
of pancreatic endoderm
Homo sapiens
pancreatic endoderm
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR641241
released
GRO-seq
of primitive gut cell
Homo sapiens
primitive gut cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR626869
released
GRO-seq
of definitive endodermal cell
Homo sapiens
definitive endodermal cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR770475
released
GRO-seq
of hESC
Homo sapiens
hESC (embryoid body cell)
Lab:
AMP-T2D consortium
Project:
AMP