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Assay category
1
DNA sequencing
Assay
1855
ChIP-seq
531
ATAC-seq
212
DNase-seq
83
snATAC-seq
75
WGBS
68
total RNA-seq
57
pCHi-C
34
Hi-C
21
RRBS
5
FAIRE-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
single cell RNA-seq
2
HiChIP
1
DNAme array
1
whole genome sequencing assay
Project
6
AMP
RFA
5
AMP
1
AMP2
Experiment status
6
released
Genome assembly (visualization)
5
hg18
Organism
6
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
cell line
1
stem cell
Organ
1
embryo
1
liver
Life stage
6
unknown
Available data
5
bigWig
5
fastq
1
vcf
Platform
5
Illumina HiSeq 2500
Run type
5
single-ended
Read length (nt)
5
50
Library made from
6
DNA
Date released
5
January, 2018
1
August, 2021
Lab
5
AMP-T2D consortium
1
Bing Ren, UCSD
Replication type
6
unreplicated
audit.WARNING.category!
inconsistent control run_type
Showing 6 of 6 results
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Experiment
DSR246XUG
released
whole genome sequencing assay
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
TSTSR520547
released
GRO-seq
of Posterior foregut
Homo sapiens
Posterior foregut
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR171680
released
GRO-seq
of pancreatic endoderm
Homo sapiens
pancreatic endoderm
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR641241
released
GRO-seq
of primitive gut cell
Homo sapiens
primitive gut cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR626869
released
GRO-seq
of definitive endodermal cell
Homo sapiens
definitive endodermal cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR770475
released
GRO-seq
of hESC
Homo sapiens
hESC (embryoid body cell)
Lab:
AMP-T2D consortium
Project:
AMP