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Citing CMDGA
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Assay category
5
3D chromatin structure
Assay
276
total RNA-seq
194
ChIP-seq
186
ATAC-seq
152
single cell RNA-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
5
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Project
3
HPAP
1
AMP
1
ITG
RFA
3
HPAP
1
AMP2
1
ITG
Experiment status
5
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
4
primary cell
1
tissue
Organ
3
epithelium
3
pancreas
1
kidney
Life stage
5
adult
Available data
5
hic
3
bedpe bed3+
3
cool
Library made from
5
DNA
Date released
3
October, 2022
1
August, 2021
1
March, 2023
Lab
AMP-T2D consortium
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
ITG
1
Katalin Susztak, Upenn
Replication type
4
anisogenic
1
unreplicated
Audit category:
3
audit script error
assay_title!
CRISPRi RNA-seq
lab.title!
AMP-T2D consortium
Bing Ren, UCSD
Showing 5 of 5 results
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Experiment
DSR798SDK
released
Hi-C
of chondrocytes
Homo sapiens
chondrocytes female adult (58 years) and female adult (63 years) and female adult (65 years) and female adult (73 years) and female adult (75 years) and male adult (61 year) and male adult (72 years) and male adult (75 years)
Lab:
ITG
Project:
ITG
Experiment
DSR177NQH
released
Audit error
1
Hi-C
of pancreatic acinar cell
Homo sapiens
pancreatic acinar cell female adult (40 years) and female adult (58 years) and male adult (19 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR954WVM
released
Audit error
1
Hi-C
of pancreatic beta cell
Homo sapiens
pancreatic beta cell female adult (27 years) and female adult (58 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR767WCG
released
Audit error
1
Hi-C
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell female adult (27 years) and female adult (58 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR145PQU
released
Hi-C
of kidney
Homo sapiens
kidney female adult (63 years)
Lab:
Katalin Susztak, Upenn
Project:
AMP