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Citing CMDGA
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Assay category
5
3D chromatin structure
Assay
346
total RNA-seq
116
ChIP-seq
111
ATAC-seq
69
single cell RNA-seq
45
WGBS
8
snATAC-seq
7
DNase-seq
5
Hi-C
4
MeRIP-seq
2
small RNA-seq
1
FAIRE-seq
1
RRBS
Project
5
AMP
RFA
3
AMP
2
AMP2
Experiment status
5
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
4
tissue
1
cell line
Organ
5
musculature of body
5
pancreas
4
limb
2
heart
1
blood vessel
1
kidney
1
liver
1
vasculature
Life stage
5
adult
1
embryonic
Available data
6
bedpe bed3+
6
hic
cool
1
bed bed3+
1
bedpe
1
bigWig
1
hdf5
Library made from
5
DNA
Date released
1
August, 2021
1
March, 2019
1
March, 2020
1
November, 2019
1
October, 2019
Lab
3
AMP-T2D consortium
2
Bing Ren, UCSD
Replication type
3
anisogenic
1
isogenic
1
unreplicated
Audit category:
1
inconsistent assembly
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pCHi-C
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Showing 5 of 5 results
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Experiment
DSR942HZR
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (56 years) and female adult (59 years) and male adult (53 years)
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR905BNL
released
Hi-C
of pancreas
Homo sapiens
pancreas female adult (30 years) and male adult (34 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR617LKP
released
Audit warning
1
Hi-C
of Panc1
Homo sapiens
Panc1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR951IJE
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (43 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR043623
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (56 years) and female adult (59 years) and male adult (53 years)
Lab:
Bing Ren, UCSD
Project:
AMP