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Schema
Citing CMDGA
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Assay category
8
3D chromatin structure
Assay
262
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
snATAC-seq
47
WGBS
29
DNase-seq
16
pCHi-C
10
RRBS
8
Hi-C
2
small RNA-seq
1
DNAme array
Project
4
AMP
3
HPAP
1
ITG
RFA
4
AMP
3
HPAP
1
ITG
Experiment status
8
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
8
Homo sapiens
Biosample type
16
tissue
8
primary cell
4
cell line
4
in vitro differentiated cells
Organ
7
epithelium
4
blood vessel
4
vasculature
3
brain
3
pancreas
vein
1
connective tissue
1
liver
Life stage
4
adult
4
unknown
Available data
4
bed bed3+
4
bigWig
4
hdf5
4
hic
3
bedpe bed3+
3
cool
Library made from
8
DNA
Date released
4
July, 2019
3
October, 2022
1
March, 2023
Lab
4
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
ITG
Replication type
4
anisogenic
4
isogenic
Audit category:
3
audit script error
assay_title!
snATAC-seq
organ_slims!
bone marrow
vein
Showing 8 of 8 results
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Experiment
DSR798SDK
released
Hi-C
of chondrocytes
Homo sapiens
chondrocytes female adult (58 years) and female adult (63 years) and female adult (65 years) and female adult (73 years) and female adult (75 years) and male adult (61 year) and male adult (72 years) and male adult (75 years)
Lab:
ITG
Project:
ITG
Experiment
DSR177NQH
released
Audit error
1
Hi-C
of pancreatic acinar cell
Homo sapiens
pancreatic acinar cell female adult (40 years) and female adult (58 years) and male adult (19 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR954WVM
released
Audit error
1
Hi-C
of pancreatic beta cell
Homo sapiens
pancreatic beta cell female adult (27 years) and female adult (58 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR767WCG
released
Audit error
1
Hi-C
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell female adult (27 years) and female adult (58 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR770TGA
released
Hi-C
of brain pericyte
Homo sapiens
brain pericyte
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR270TQF
released
Hi-C
of astrocyte of the cerebellum
Homo sapiens
astrocyte of the cerebellum
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR933OWU
released
Hi-C
of endothelial cell of hepatic sinusoid
Homo sapiens
endothelial cell of hepatic sinusoid
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR240JNB
released
Hi-C
of brain microvascular endothelial cell
Homo sapiens
brain microvascular endothelial cell
Lab:
AMP-T2D consortium
Project:
AMP