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Citing CMDGA
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Assay category
4
3D chromatin structure
3
Transcription
Assay
552
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Project
7
AMP
RFA
6
AMP
1
AMP2
Experiment status
7
released
Genome assembly (visualization)
6
hg19
3
GRCh38
Organism
7
Homo sapiens
Biosample type
4
tissue
2
cell line
1
primary cell
Organ
8
musculature of body
8
pancreas
7
brain
7
liver
4
blood vessel
4
connective tissue
4
epithelium
4
heart
4
limb
4
vasculature
3
adipose tissue
2
kidney
1
vein
Life stage
3
adult
2
unknown
1
child
1
embryonic
Available data
4
bigWig
3
bam
3
tsv
2
bedpe bed3+
2
hic
1
bed bed3+
1
fastq
1
hdf5
Platform
1
Illumina HiSeq 2000
Run type
1
paired-ended
Read length (nt)
1
50
Library made from
4
DNA
3
RNA
Date released
4
July, 2019
1
August, 2021
1
December, 2018
1
March, 2020
Lab
6
AMP-T2D consortium
1
Bing Ren, UCSD
Replication type
5
unreplicated
2
isogenic
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Showing 7 of 7 results
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Experiment
DSR744JJN
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR477FKL
released
Hi-C
of liver
Homo sapiens
liver male adult (32 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR933OWU
released
Hi-C
of endothelial cell of hepatic sinusoid
Homo sapiens
endothelial cell of hepatic sinusoid
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR043CMH
released
small RNA-seq
of right lobe of liver
Homo sapiens
right lobe of liver female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR467AXQ
released
small RNA-seq
of right lobe of liver
Homo sapiens
right lobe of liver female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR494RGE
released
small RNA-seq
of liver
Homo sapiens
liver female embryo (20 weeks)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR542TGF
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP