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Schema
Citing CMDGA
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Assay category
2
3D chromatin structure
1
DNA methylation
Assay
378
ChIP-seq
14
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
ATAC-seq
1
WGBS
1
whole genome sequencing assay
Project
3
AMP
RFA
2
AMP
1
AMP2
Experiment status
3
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
3
Homo sapiens
Biosample type
3
cell line
Organ
3
liver
Life stage
2
child
1
unknown
Available data
2
fastq
1
bam
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
bigWig
1
hic
Platform
1
Illumina HiSeq 2000
1
Illumina HiSeq X Ten
Run type
2
paired-ended
Read length (nt)
1
50
1
151
Library made from
3
DNA
Date released
1
August, 2021
1
December, 2018
1
November, 2018
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
Replication type
2
isogenic
1
unreplicated
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Karen Mohlke, UNC
Showing 3 of 3 results
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Experiment
DSR744JJN
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
TSTSR542TGF
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR496DZA
released
WGBS
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP