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Citing CMDGA
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Assay category
5
DNA accessibility
1
3D chromatin structure
Assay
287
total RNA-seq
71
ChIP-seq
57
ATAC-seq
6
single cell RNA-seq
5
snATAC-seq
4
MeRIP-seq
4
pCHi-C
1
DNase-seq
1
FAIRE-seq
1
Hi-C
1
RRBS
Project
4
T1D
2
AMP
RFA
4
T1D
1
AMP
1
AMP2
Experiment status
6
released
Genome assembly (visualization)
1
hg19
Organism
6
Homo sapiens
Biosample type
6
tissue
Organ
6
pancreas
Life stage
5
adult
1
unknown
Available data
bedpe bed3+
2
hic
1
bedpe
Library made from
6
DNA
Date released
4
January, 2021
February, 2023
1
August, 2022
1
March, 2019
Lab
4
Kyle Gaulton, UCSD
1
AMP-T2D consortium
1
Bing Ren, UCSD
Replication type
4
unreplicated
1
anisogenic
1
isogenic
Audit category:
1
audit script error
audit.WARNING.category!
inconsistent control run_type
files.file_type!
bedpe bed3+
month_released!
February, 2023
Showing 6 of 6 results
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Experiment
DSR260JLJ
released
Audit error
1
snATAC-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR031KHQ
released
snATAC-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male adult (37 years)
Lab:
Kyle Gaulton, UCSD
Project:
T1D
Experiment
DSR049FNX
released
snATAC-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male adult (62 years)
Lab:
Kyle Gaulton, UCSD
Project:
T1D
Experiment
DSR707UPV
released
snATAC-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male adult (45 years)
Lab:
Kyle Gaulton, UCSD
Project:
T1D
Experiment
DSR442HUB
released
snATAC-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male adult (32 years)
Lab:
Kyle Gaulton, UCSD
Project:
T1D
Experiment
TSTSR043623
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (56 years) and female adult (59 years) and male adult (53 years)
Lab:
Bing Ren, UCSD
Project:
AMP