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Citing CMDGA
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Assay category
4
3D chromatin structure
Assay
105
total RNA-seq
81
ATAC-seq
72
ChIP-seq
70
single cell RNA-seq
47
WGBS
6
MeRIP-seq
6
RRBS
4
Hi-C
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
cell line
Organ
6
musculature of body
6
pancreas
4
blood vessel
4
epithelium
4
limb
4
liver
4
vasculature
3
brain
3
heart
1
connective tissue
1
kidney
1
vein
Life stage
3
unknown
1
embryonic
Available data
2
bed bed3+
2
bedpe bed3+
2
bigWig
2
hdf5
2
hic
Library made from
4
DNA
Date released
2
July, 2019
1
March, 2020
1
November, 2019
Lab
4
AMP-T2D consortium
Replication type
2
isogenic
1
anisogenic
1
unreplicated
Audit category:
audit script error
1
inconsistent ontology term
audit.ERROR.category!
audit script error
files.file_type!
bigBed narrowPeak
month_released!
September, 2018
Showing 4 of 4 results
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Experiment
DSR430XOJ
released
Hi-C
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR433ZII
released
Audit error
1
Hi-C
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR933OWU
released
Hi-C
of endothelial cell of hepatic sinusoid
Homo sapiens
endothelial cell of hepatic sinusoid
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR240JNB
released
Hi-C
of brain microvascular endothelial cell
Homo sapiens
brain microvascular endothelial cell
Lab:
AMP-T2D consortium
Project:
AMP