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Schema
Citing CMDGA
Clear Filters
Assay category
5
3D chromatin structure
Assay
217
total RNA-seq
194
ChIP-seq
77
single cell RNA-seq
52
ATAC-seq
28
snATAC-seq
16
pCHi-C
5
Hi-C
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Project
3
HPAP
1
AMP
1
ITG
RFA
3
HPAP
1
AMP2
1
ITG
Experiment status
5
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
4
primary cell
1
tissue
Organ
4
pancreas
3
epithelium
Life stage
5
adult
Available data
5
hic
3
bedpe bed3+
3
cool
1
bedpe
Library made from
5
DNA
Date released
August, 2021
3
October, 2022
1
March, 2019
1
March, 2023
Lab
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
Replication type
5
anisogenic
Audit category:
3
audit script error
audit.ERROR.category!
inconsistent ontology term
files.run_type!
paired-ended
lab.title!
AMP-T2D consortium
month_released!
August, 2021
Showing 5 of 5 results
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Experiment
DSR798SDK
released
Hi-C
of chondrocytes
Homo sapiens
chondrocytes female adult (58 years) and female adult (63 years) and female adult (65 years) and female adult (73 years) and female adult (75 years) and male adult (61 year) and male adult (72 years) and male adult (75 years)
Lab:
ITG
Project:
ITG
Experiment
DSR177NQH
released
Audit error
1
Hi-C
of pancreatic acinar cell
Homo sapiens
pancreatic acinar cell female adult (40 years) and female adult (58 years) and male adult (19 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR954WVM
released
Audit error
1
Hi-C
of pancreatic beta cell
Homo sapiens
pancreatic beta cell female adult (27 years) and female adult (58 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR767WCG
released
Audit error
1
Hi-C
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell female adult (27 years) and female adult (58 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
TSTSR043623
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (56 years) and female adult (59 years) and male adult (53 years)
Lab:
Bing Ren, UCSD
Project:
AMP