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Schema
Citing CMDGA
Clear Filters
Assay category
7
3D chromatin structure
Assay
561
ChIP-seq
67
ATAC-seq
48
total RNA-seq
17
DNase-seq
17
RRBS
8
pCHi-C
7
Hi-C
6
MeRIP-seq
4
STARR-seq
4
snATAC-seq
3
single cell RNA-seq
2
WGBS
1
FAIRE-seq
Project
7
AMP
RFA
7
AMP
Experiment status
7
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
4
in vitro differentiated cells
2
cell line
1
primary cell
Organ
brain
2
blood vessel
2
epithelium
2
liver
2
vasculature
1
connective tissue
1
pancreas
Life stage
3
adult
3
unknown
1
child
Available data
4
bedpe bed3+
4
hic
2
bed bed3+
2
bigWig
2
hdf5
1
fastq
Platform
1
Illumina HiSeq 2000
Run type
1
paired-ended
Read length (nt)
1
50
Library made from
7
DNA
Date released
3
October, 2019
2
March, 2020
1
December, 2018
1
July, 2019
Lab
7
AMP-T2D consortium
Replication type
13
unreplicated
7
isogenic
5
anisogenic
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent assembly
month_released!
November, 2019
organ_slims!
brain
Showing 7 of 7 results
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Experiment
DSR763JZB
released
Audit error
1
Hi-C
of lymphocyte of B lineage (iPSC)
Homo sapiens
lymphocyte of B lineage (iPSC)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR722REK
released
Audit error
1
Hi-C
of cardiomyocytes (cardiac muscle cell)
Homo sapiens
cardiomyocytes (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR464RKE
released
Audit error
1
Hi-C
of cardiac precursors (cardiac muscle cell)
Homo sapiens
cardiac precursors (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR235SPD
released
Audit error
1
Hi-C
of cardiomyocytes (cardiac muscle cell)
Homo sapiens
cardiomyocytes (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR617LKP
released
Audit warning
1
Hi-C
of Panc1
Homo sapiens
Panc1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR933OWU
released
Hi-C
of endothelial cell of hepatic sinusoid
Homo sapiens
endothelial cell of hepatic sinusoid
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR542TGF
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP