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Schema
Citing CMDGA
Clear Filters
Assay category
7
3D chromatin structure
Assay
92
ChIP-seq
56
ATAC-seq
36
total RNA-seq
25
pCHi-C
18
DNase-seq
10
RRBS
7
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
GRO-seq
1
whole genome sequencing assay
Project
7
AMP
RFA
6
AMP
1
AMP2
Experiment status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
6
primary cell
in vitro differentiated cells
1
cell line
Organ
4
blood vessel
4
epithelium
4
vasculature
3
brain
2
liver
2
vein
1
connective tissue
Life stage
7
unknown
1
adult
1
child
Available data
4
bed bed3+
4
bigWig
4
hdf5
3
hic
2
bedpe bed3+
Library made from
7
DNA
Date released
4
July, 2019
1
August, 2021
1
March, 2020
1
October, 2019
Lab
6
AMP-T2D consortium
1
Bing Ren, UCSD
Replication type
4
isogenic
2
unreplicated
1
anisogenic
Audit category:
1
audit script error
biosample_type!
in vitro differentiated cells
tissue
organ_slims!
pancreas
Showing 7 of 7 results
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Experiment
DSR744JJN
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR430XOJ
released
Hi-C
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR251SCT
released
Audit error
1
Hi-C
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR770TGA
released
Hi-C
of brain pericyte
Homo sapiens
brain pericyte
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR270TQF
released
Hi-C
of astrocyte of the cerebellum
Homo sapiens
astrocyte of the cerebellum
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR933OWU
released
Hi-C
of endothelial cell of hepatic sinusoid
Homo sapiens
endothelial cell of hepatic sinusoid
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR240JNB
released
Hi-C
of brain microvascular endothelial cell
Homo sapiens
brain microvascular endothelial cell
Lab:
AMP-T2D consortium
Project:
AMP