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Schema
Citing CMDGA
Clear Filters
Assay category
4
3D chromatin structure
Assay
878
ChIP-seq
483
total RNA-seq
271
ATAC-seq
186
single cell RNA-seq
56
snATAC-seq
48
WGBS
34
DNase-seq
29
pCHi-C
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
RRBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
3
AMP
1
ITG
RFA
3
AMP
1
ITG
Experiment status
4
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
4
Homo sapiens
Biosample type
2
cell line
2
primary cell
tissue
Organ
1
blood vessel
1
epithelium
1
liver
1
pancreas
1
vasculature
1
vein
Life stage
2
adult
1
child
1
unknown
Available data
12
hic
bedpe bed3+
3
cool
1
bed bed3+
1
bigWig
1
fastq
1
hdf5
Platform
1
Illumina HiSeq 2000
Run type
1
paired-ended
Read length (nt)
1
50
Library made from
4
DNA
Date released
July, 2019
2
October, 2019
1
December, 2018
1
March, 2023
Lab
3
AMP-T2D consortium
1
ITG
Replication type
2
isogenic
1
anisogenic
1
unreplicated
Audit category:
1
audit script error
Audit category:
1
inconsistent assembly
biosample_type!
tissue
files.file_type!
bedpe bed3+
month_released!
July, 2019
target.investigated_as!
RNA binding protein
Showing 4 of 4 results
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Experiment
DSR798SDK
released
Hi-C
of chondrocytes
Homo sapiens
chondrocytes female adult (58 years) and female adult (63 years) and female adult (65 years) and female adult (73 years) and female adult (75 years) and male adult (61 year) and male adult (72 years) and male adult (75 years)
Lab:
ITG
Project:
ITG
Experiment
DSR617LKP
released
Audit warning
1
Hi-C
of Panc1
Homo sapiens
Panc1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR251SCT
released
Audit error
1
Hi-C
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR542TGF
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP