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Assay category
6
3D chromatin structure
Assay
282
ChIP-seq
234
total RNA-seq
200
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
21
pCHi-C
6
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
RRBS
Project
3
HPAP
2
AMP
1
ITG
RFA
3
HPAP
2
AMP
1
ITG
Experiment status
6
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
12
tissue
6
primary cell
4
cell line
4
in vitro differentiated cells
0
stem cell
Organ
5
epithelium
3
pancreas
2
blood vessel
2
vasculature
2
vein
Life stage
4
adult
2
unknown
Available data
6
hic
4
bedpe bed3+
3
cool
Library made from
6
DNA
Date released
July, 2019
3
October, 2022
1
March, 2020
1
March, 2023
1
October, 2019
Lab
3
Klaus Kaestner, Upenn
2
AMP-T2D consortium
1
ITG
Replication type
5
anisogenic
1
unreplicated
Audit category:
4
audit script error
files.file_type!
tar
month_released!
July, 2019
Showing 6 of 6 results
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Experiment
DSR798SDK
released
Hi-C
of chondrocytes
Homo sapiens
chondrocytes female adult (58 years) and female adult (63 years) and female adult (65 years) and female adult (73 years) and female adult (75 years) and male adult (61 year) and male adult (72 years) and male adult (75 years)
Lab:
ITG
Project:
ITG
Experiment
DSR177NQH
released
Audit error
1
Hi-C
of pancreatic acinar cell
Homo sapiens
pancreatic acinar cell female adult (40 years) and female adult (58 years) and male adult (19 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR954WVM
released
Audit error
1
Hi-C
of pancreatic beta cell
Homo sapiens
pancreatic beta cell female adult (27 years) and female adult (58 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR767WCG
released
Audit error
1
Hi-C
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell female adult (27 years) and female adult (58 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR430XOJ
released
Hi-C
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR251SCT
released
Audit error
1
Hi-C
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein
Lab:
AMP-T2D consortium
Project:
AMP