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Schema
Citing CMDGA
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Assay category
6
3D chromatin structure
Assay
795
total RNA-seq
291
ChIP-seq
158
ATAC-seq
80
single cell RNA-seq
57
WGBS
11
snATAC-seq
10
DNase-seq
10
MeRIP-seq
6
Hi-C
5
small RNA-seq
3
pCHi-C
2
Capture-C
2
FAIRE-seq
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Project
6
AMP
RFA
4
AMP
2
AMP2
Experiment status
6
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
4
tissue
2
cell line
Organ
6
musculature of body
6
pancreas
5
blood vessel
5
epithelium
5
vasculature
4
limb
4
liver
3
brain
3
heart
2
vein
1
connective tissue
1
kidney
0
adipose tissue
Life stage
5
adult
1
embryonic
Available data
7
bedpe bed3+
7
hic
cool
1
bed bed3+
1
bedpe
1
bigWig
1
hdf5
Library made from
6
DNA
Date released
2
November, 2019
1
August, 2021
1
March, 2019
1
March, 2020
1
October, 2019
Lab
4
AMP-T2D consortium
2
Bing Ren, UCSD
Replication type
3
anisogenic
2
unreplicated
1
isogenic
Audit category:
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.file_type!
cool
organ_slims!
skeleton
Showing 6 of 6 results
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Experiment
DSR942HZR
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (56 years) and female adult (59 years) and male adult (53 years)
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR905BNL
released
Hi-C
of pancreas
Homo sapiens
pancreas female adult (30 years) and male adult (34 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR617LKP
released
Audit warning
1
Hi-C
of Panc1
Homo sapiens
Panc1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR433ZII
released
Audit error
1
Hi-C
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR951IJE
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (43 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR043623
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (56 years) and female adult (59 years) and male adult (53 years)
Lab:
Bing Ren, UCSD
Project:
AMP