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Schema
Citing CMDGA
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Assay category
6
3D chromatin structure
Assay
162
total RNA-seq
143
ChIP-seq
103
ATAC-seq
28
pCHi-C
25
DNase-seq
11
small RNA-seq
6
Hi-C
6
single cell RNA-seq
5
snATAC-seq
4
MeRIP-seq
2
Capture-C
2
FAIRE-seq
2
snDrop-seq
1
DNAme array
Project
5
AMP
1
ITG
RFA
3
AMP
2
AMP2
1
ITG
Experiment status
6
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
4
tissue
2
primary cell
Organ
3
pancreas
1
blood vessel
1
epithelium
1
heart
1
vasculature
1
vein
Life stage
4
adult
1
embryonic
1
unknown
Available data
5
hic
4
bedpe bed3+
1
bedpe
Library made from
6
DNA
Date released
2
March, 2020
1
August, 2021
1
March, 2019
1
March, 2023
1
October, 2019
Lab
3
AMP-T2D consortium
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
Replication type
15
unreplicated
9
isogenic
6
anisogenic
files.file_type!
fastq
lab.title!
Klaus Kaestner, Upenn
month_released!
February, 2020
Showing 6 of 6 results
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Experiment
DSR798SDK
released
Hi-C
of chondrocytes
Homo sapiens
chondrocytes female adult (58 years) and female adult (63 years) and female adult (65 years) and female adult (73 years) and female adult (75 years) and male adult (61 year) and male adult (72 years) and male adult (75 years)
Lab:
ITG
Project:
ITG
Experiment
DSR942HZR
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (56 years) and female adult (59 years) and male adult (53 years)
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR905BNL
released
Hi-C
of pancreas
Homo sapiens
pancreas female adult (30 years) and male adult (34 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR430XOJ
released
Hi-C
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR786VPZ
released
Hi-C
of heart
Homo sapiens
heart embryo (57 days) and embryo (67 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR043623
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (56 years) and female adult (59 years) and male adult (53 years)
Lab:
Bing Ren, UCSD
Project:
AMP