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Schema
Citing CMDGA
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Assay category
3
3D chromatin structure
Assay
385
total RNA-seq
189
ChIP-seq
87
ATAC-seq
51
WGBS
10
single cell RNA-seq
9
snATAC-seq
7
DNase-seq
6
MeRIP-seq
3
Hi-C
2
Capture-C
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
2
cell line
1
tissue
Organ
6
musculature of body
4
blood vessel
4
epithelium
4
limb
4
vasculature
3
brain
3
liver
3
pancreas
2
heart
1
connective tissue
1
kidney
1
vein
Life stage
2
adult
1
embryonic
Available data
2
bedpe bed3+
2
hic
1
bed bed3+
1
bigWig
1
hdf5
Library made from
3
DNA
Date released
2
November, 2019
1
October, 2019
Lab
3
AMP-T2D consortium
Replication type
anisogenic
2
unreplicated
1
isogenic
Audit category:
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
files.read_length!
50
replication_type!
anisogenic
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Experiment
DSR617LKP
released
Audit warning
1
Hi-C
of Panc1
Homo sapiens
Panc1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR433ZII
released
Audit error
1
Hi-C
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR951IJE
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (43 years)
Lab:
AMP-T2D consortium
Project:
AMP