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Citing CMDGA
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Assay category
4
3D chromatin structure
Assay
504
ChIP-seq
189
total RNA-seq
23
ATAC-seq
4
Hi-C
4
WGBS
3
DNase-seq
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Project
4
AMP
RFA
3
AMP
1
AMP2
Experiment status
4
released
Genome assembly (visualization)
3
hg19
Organism
4
Homo sapiens
Biosample type
2
cell line
1
primary cell
1
tissue
Organ
9
pancreas
8
epithelium
6
musculature of body
5
blood vessel
5
vasculature
4
limb
4
liver
3
brain
3
heart
2
vein
1
connective tissue
1
kidney
0
lymph node
Life stage
2
unknown
1
adult
1
child
Available data
2
bedpe bed3+
2
hic
1
bed bed3+
1
bigWig
1
fastq
1
hdf5
Platform
1
Illumina HiSeq 2000
Run type
1
paired-ended
Read length (nt)
1
50
Library made from
4
DNA
Date released
1
August, 2021
1
December, 2018
1
July, 2019
1
March, 2020
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
Replication type
2
isogenic
2
unreplicated
month_released!
November, 2018
Showing 4 of 4 results
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Experiment
DSR744JJN
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR477FKL
released
Hi-C
of liver
Homo sapiens
liver male adult (32 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR933OWU
released
Hi-C
of endothelial cell of hepatic sinusoid
Homo sapiens
endothelial cell of hepatic sinusoid
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR542TGF
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP