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Schema
Citing CMDGA
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Assay category
3
3D chromatin structure
Assay
111
DNase-seq
79
ATAC-seq
77
total RNA-seq
67
single cell RNA-seq
51
ChIP-seq
6
RRBS
6
snATAC-seq
5
small RNA-seq
4
pCHi-C
3
Hi-C
3
snDrop-seq
2
FAIRE-seq
2
RNA microarray
2
STARR-seq
Project
3
AMP
RFA
2
AMP
1
AMP2
Experiment status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
tissue
Organ
9
pancreas
8
epithelium
6
musculature of body
blood vessel
5
vasculature
4
limb
4
liver
3
brain
3
heart
2
vein
1
connective tissue
1
kidney
Life stage
2
unknown
1
adult
Available data
2
bed bed3+
2
bigWig
2
hdf5
1
hic
Library made from
3
DNA
Date released
2
July, 2019
1
August, 2021
Lab
2
AMP-T2D consortium
1
Katalin Susztak, Upenn
Replication type
2
isogenic
1
unreplicated
organ_slims!
blood vessel
target.investigated_as!
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Experiment
DSR145PQU
released
Hi-C
of kidney
Homo sapiens
kidney female adult (63 years)
Lab:
Katalin Susztak, Upenn
Project:
AMP
Experiment
DSR770TGA
released
Hi-C
of brain pericyte
Homo sapiens
brain pericyte
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR270TQF
released
Hi-C
of astrocyte of the cerebellum
Homo sapiens
astrocyte of the cerebellum
Lab:
AMP-T2D consortium
Project:
AMP