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Assay category
6
Transcription
Assay
1765
ChIP-seq
375
ATAC-seq
212
DNase-seq
85
RNA microarray
64
total RNA-seq
28
WGBS
26
Hi-C
21
RRBS
10
MeRIP-seq
9
pCHi-C
6
single cell RNA-seq
5
FAIRE-seq
5
GRO-seq
2
Capture-C
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
Project
7
AMP
RFA
85
HPAP
47
KPMP
11
AMP2
9
LungMap2
7
AMP
Experiment status
7
released
Organism
6
Homo sapiens
Biosample type
4
tissue
2
primary cell
1
cell line
Organ
1
heart
1
kidney
1
liver
1
musculature of body
Life stage
4
adult
2
unknown
Available data
tsv
106
bam
106
bigWig
100
fastq
8
csv
6
txt
Platform
2
Illumina HiSeq 2500
Run type
2
paired-ended
Read length (nt)
2
97
1
99
1
105
1
110
1
147
Library made from
6
RNA
Date released
1
December, 2019
1
February, 2021
1
February, 2023
1
May, 2022
1
November, 2018
1
October, 2022
1
September, 2018
Lab
7
AMP-T2D consortium
Replication type
4
anisogenic
3
unreplicated
files.file_type!
tsv
lab.title!
Struan F.A. Grant, CHOP
Showing 7 of 7 results
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Experiment
DSR880DJB
released
single cell RNA-seq
of heart
Homo sapiens
heart female adult (47 years) and female adult (51 year) and female adult (52 years) and female adult (60 years) and male adult (39 years) and male adult (54 years) and male adult (59 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR700KTH
released
MPRA
of MIN6
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR946SNV
released
single cell RNA-seq
of skeletal muscle tissue
Homo sapiens
skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR373SNC
released
single cell RNA-seq
of liver
Homo sapiens
liver female adult (41 year) and male adult (21 year) and male adult (26 years) and male adult (44 years) and male adult (65 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR606NGC
released
single cell RNA-seq
of kidney
Homo sapiens
kidney
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR728QVV
released
single cell RNA-seq
of pancreatic cell
Homo sapiens
pancreatic cell female adult (59 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR461MDN
released
single cell RNA-seq
of pancreatic cell
Homo sapiens
pancreatic cell female adult (51 year) and male adult (17 years) and male adult (38 years)
Lab:
AMP-T2D consortium
Project:
AMP