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Citing CMDGA
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Assay category
6
DNA methylation
Assay
1483
total RNA-seq
854
ChIP-seq
ATAC-seq
366
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
63
WGBS
57
pCHi-C
26
Hi-C
10
MeRIP-seq
6
RRBS
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
4
hg19
Organism
6
Homo sapiens
Biosample type
5
tissue
1
primary cell
Organ
4
musculature of body
1
liver
Life stage
5
adult
1
unknown
Available data
4
bed bedMethyl
4
bigBed bedMethyl
4
fastq
Platform
4
Illumina Genome Analyzer IIx
Run type
4
single-ended
Read length (nt)
4
36
Library made from
6
DNA
Date released
July, 2019
6
August, 2017
Lab
6
AMP-T2D consortium
Replication type
4
isogenic
2
unreplicated
assay_title!
ATAC-seq
month_released!
July, 2019
target.investigated_as!
histone modification
Showing 6 of 6 results
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Experiment
TSTSR335337
released
RRBS
of liver
Homo sapiens
liver female adult (83 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR698044
released
RRBS
of skeletal muscle tissue
Homo sapiens
skeletal muscle tissue female adult (72 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR637767
released
RRBS
of skeletal muscle tissue
Homo sapiens
skeletal muscle tissue male adult (54 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR745497
released
RRBS
of skeletal muscle tissue
Homo sapiens
skeletal muscle tissue male adult (71 year)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR621123
released
RRBS
of skeletal muscle tissue
Homo sapiens
skeletal muscle tissue female adult (83 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR288454
released
RRBS
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP