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Citing CMDGA
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Assay category
5
DNA methylation
Assay
580
ChIP-seq
41
total RNA-seq
25
single cell RNA-seq
19
ATAC-seq
7
DNase-seq
5
GRO-seq
5
WGBS
5
snATAC-seq
1
FAIRE-seq
1
Hi-C
1
RRBS
1
pCHi-C
Project
3
AMP
2
HPAP
RFA
3
AMP
2
HPAP
Experiment status
5
released
Genome assembly (visualization)
2
GRCh38
Organism
5
Homo sapiens
Biosample type
2
primary cell
2
tissue
1
cell line
Organ
2
epithelium
2
liver
2
pancreas
1
adipose tissue
1
connective tissue
Life stage
adult
5
child
Available data
6
bam
6
bed bedMethyl
6
bigBed bedMethyl
6
bigWig
5
fastq
4
zippedFastqFolder
2
tsv
Platform
2
Illumina HiSeq 2500
2
Illumina NovaSeq 6000
1
Illumina HiSeq X Ten
Run type
3
paired-ended
2
single-ended
Read length (nt)
4
100
1
151
Library made from
5
DNA
Date released
2
August, 2017
2
February, 2021
1
November, 2018
Lab
3
AMP-T2D consortium
2
Klaus Kaestner, Upenn
Replication type
3
isogenic
2
unreplicated
audit.NOT_COMPLIANT.category!
missing controlled_by
lab.title!
Maike Sander, UCSD
replicates.library.biosample.life_stage!
adult
Showing 5 of 5 results
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Experiment
DSR163MXE
released
WGBS
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell male child (3 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR791IRT
released
WGBS
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell female child (14 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
TSTSR496DZA
released
WGBS
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR031119
released
WGBS
of adipose tissue
Homo sapiens
adipose tissue male child (3 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR621783
released
WGBS
of liver
Homo sapiens
liver male child (3 years)
Lab:
AMP-T2D consortium
Project:
AMP