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Assay category
44
DNA methylation
Assay
1028
ChIP-seq
910
total RNA-seq
315
ATAC-seq
225
single cell RNA-seq
114
DNase-seq
49
RNA microarray
49
snATAC-seq
44
WGBS
32
pCHi-C
14
Hi-C
12
RRBS
11
small RNA-seq
7
MeRIP-seq
4
Capture-C
4
FAIRE-seq
3
STARR-seq
2
CRISPR genome editing followed by DNA sequencing
2
GRO-seq
2
snDrop-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
siRNA RNA-seq
Project
29
HPAP
15
AMP
RFA
29
HPAP
15
AMP
Experiment status
44
released
Genome assembly (visualization)
9
GRCh38
Organism
44
Homo sapiens
Biosample type
29
primary cell
14
tissue
1
cell line
Organ
31
pancreas
5
liver
3
adipose tissue
3
connective tissue
3
heart
1
blood vessel
1
spleen
1
vasculature
Life stage
36
adult
7
child
1
embryonic
Available data
9
bam
9
bed bedMethyl
9
bigBed bedMethyl
9
bigWig
7
fastq
6
tsv
Platform
4
Illumina HiSeq 2500
3
Illumina HiSeq X Ten
Run type
4
single-ended
3
paired-ended
Read length (nt)
4
100
3
151
Library made from
44
DNA
Date released
23
May, 2022
6
August, 2017
6
February, 2021
5
July, 2019
4
November, 2018
Lab
29
Klaus Kaestner, Upenn
15
AMP-T2D consortium
Replication type
36
unreplicated
8
isogenic
month_released!
December, 2017
Showing 7 of 44 results
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Experiment
DSR342ZOR
released
WGBS
of pancreatic beta cell
Homo sapiens
pancreatic beta cell male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR918JOS
released
WGBS
of pancreatic beta cell
Homo sapiens
pancreatic beta cell male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR492VHB
released
WGBS
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell male adult (29 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR693HFB
released
WGBS
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR878VOJ
released
WGBS
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell male adult (26 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR163MXE
released
WGBS
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell male child (3 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR992DXL
released
WGBS
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell female adult (24 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP