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Assay
1457
ChIP-seq
1223
total RNA-seq
403
ATAC-seq
365
single cell RNA-seq
192
DNase-seq
85
RNA microarray
80
snATAC-seq
75
WGBS
25
Hi-C
18
small RNA-seq
10
RRBS
8
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
2
snDrop-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Project
8
AMP
RFA
8
AMP
Experiment status
8
released
Genome assembly (visualization)
4
hg19
Organism
8
Homo sapiens
Biosample type
4
tissue
2
in vitro differentiated cells
1
cell line
1
primary cell
Organ
4
eye
1
connective tissue
1
liver
Life stage
unknown
8
adult
Available data
2
bed bed3+
2
bedpe bed3+
2
ibed
1
bam
Library made from
8
DNA
Date released
4
October, 2019
2
February, 2021
2
March, 2020
Lab
8
AMP-T2D consortium
Replication type
4
unreplicated
3
isogenic
1
anisogenic
Audit category:
2
inconsistent ontology term
audit.WARNING.category!
inconsistent control run_type
month_released!
August, 2022
January, 2019
replicates.library.biosample.life_stage!
unknown
Showing 8 of 8 results
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Experiment
DSR583PNT
released
pCHi-C
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR241RZY
released
pCHi-C
of osteoblast
Homo sapiens
osteoblast adult
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR535XNG
released
Audit error
1
pCHi-C
of lymphocyte of B lineage (iPSC)
Homo sapiens
lymphocyte of B lineage (iPSC)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR382TEU
released
Audit error
1
pCHi-C
of cardiomyocytes (cardiac muscle cell)
Homo sapiens
cardiomyocytes (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR896KME
released
pCHi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (32 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR691JIZ
released
pCHi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans male adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR563ZWW
released
pCHi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (67 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR072PQG
released
pCHi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans male adult (40 years)
Lab:
AMP-T2D consortium
Project:
AMP