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Citing CMDGA
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Assay
1651
ChIP-seq
307
ATAC-seq
212
DNase-seq
32
total RNA-seq
28
WGBS
26
Hi-C
21
RRBS
7
pCHi-C
5
FAIRE-seq
5
GRO-seq
5
single cell RNA-seq
2
Capture-C
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
RNA microarray
Project
7
AMP
RFA
7
AMP
Experiment status
7
released
Genome assembly (visualization)
2
hg19
Organism
7
Homo sapiens
Biosample type
4
tissue
3
in vitro differentiated cells
Organ
4
eye
1
adipose tissue
1
connective tissue
Life stage
6
adult
1
unknown
Available data
tsv
3
bedpe bed3+
2
ibed
1
fastq
Platform
1
Illumina HiSeq 4000
Run type
1
paired-ended
Read length (nt)
1
69
Library made from
7
DNA
Date released
4
October, 2019
February, 2021
2
March, 2020
1
August, 2018
Lab
17
Kyle Gaulton, UCSD
7
AMP-T2D consortium
Replication type
5
unreplicated
2
isogenic
Audit category:
2
inconsistent ontology term
files.file_type!
tsv
month_released!
February, 2021
Showing 7 of 7 results
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Experiment
DSR535XNG
released
Audit error
1
pCHi-C
of lymphocyte of B lineage (iPSC)
Homo sapiens
lymphocyte of B lineage (iPSC)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR382TEU
released
Audit error
1
pCHi-C
of cardiomyocytes (cardiac muscle cell)
Homo sapiens
cardiomyocytes (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR896KME
released
pCHi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (32 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR691JIZ
released
pCHi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans male adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR563ZWW
released
pCHi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (67 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR072PQG
released
pCHi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans male adult (40 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR423QSN
released
pCHi-C
of white fat cell
Homo sapiens
white adipose cell
Lab:
AMP-T2D consortium
Project:
AMP