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Assay
1037
total RNA-seq
805
ChIP-seq
158
DNase-seq
154
ATAC-seq
122
single cell RNA-seq
87
RNA microarray
26
WGBS
10
Hi-C
7
small RNA-seq
5
GRO-seq
4
pCHi-C
2
Capture-C
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
MPRA
1
snATAC-seq
1
snDrop-seq
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Organism
4
Homo sapiens
Biosample type
3
stem cell
1
in vitro differentiated cells
Organ
1
adipose tissue
1
connective tissue
Life stage
4
unknown
Available data
3
tsv
1
bedpe bed3+
1
fastq
Platform
1
Illumina HiSeq 4000
Run type
1
paired-ended
Read length (nt)
1
69
Library made from
4
DNA
Date released
October, 2019
3
March, 2020
1
August, 2018
Lab
4
AMP-T2D consortium
Replication type
24
anisogenic
8
isogenic
4
unreplicated
month_released!
November, 2019
October, 2019
Showing 4 of 4 results
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Experiment
DSR159GRR
released
pCHi-C
of trophoblast
Homo sapiens
trophoblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR055YXC
released
pCHi-C
of neural progenitor cell (neural stem cell)
Homo sapiens
neural progenitor cell (neural stem cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR543FXV
released
pCHi-C
of mesendoderm
Homo sapiens
mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR423QSN
released
pCHi-C
of white fat cell
Homo sapiens
white adipose cell
Lab:
AMP-T2D consortium
Project:
AMP