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Assay category
6
Transcription
Assay
152
ATAC-seq
122
ChIP-seq
pCHi-C
47
total RNA-seq
19
RRBS
16
Hi-C
10
MeRIP-seq
8
snATAC-seq
7
WGBS
6
single cell RNA-seq
4
DNase-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
2
snDrop-seq
1
DNAme array
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
GRCh38
89
hg19
Organism
6
Homo sapiens
Biosample type
3
tissue
2
in vitro differentiated cells
1
primary cell
Organ
1
heart
1
liver
1
musculature of body
Life stage
3
adult
3
unknown
Available data
2
csv
2
tsv
1
fastq
Platform
1
Illumina HiSeq 2500
Run type
1
paired-ended
Read length (nt)
1
97
1
99
1
110
1
147
Library made from
6
RNA
Date released
2
December, 2019
1
February, 2021
1
February, 2023
1
May, 2022
1
September, 2018
Lab
6
AMP-T2D consortium
Replication type
unreplicated
4
anisogenic
2
isogenic
Audit category:
2
audit script error
2
inconsistent ontology term
assay_title!
pCHi-C
assembly!
GRCh38
month_released!
August, 2021
replication_type!
unreplicated
Showing 6 of 6 results
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Experiment
DSR880DJB
released
single cell RNA-seq
of heart
Homo sapiens
heart female adult (47 years) and female adult (51 year) and female adult (52 years) and female adult (60 years) and male adult (39 years) and male adult (54 years) and male adult (59 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR946SNV
released
single cell RNA-seq
of skeletal muscle tissue
Homo sapiens
skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR690SBQ
released
Audit error
2
single cell RNA-seq
of cardiomyocytes (cardiac muscle cell)
Homo sapiens
cardiomyocytes (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR054HMA
released
Audit error
2
single cell RNA-seq
of cardiomyocytes (cardiac muscle cell)
Homo sapiens
cardiomyocytes (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR373SNC
released
single cell RNA-seq
of liver
Homo sapiens
liver female adult (41 year) and male adult (21 year) and male adult (26 years) and male adult (44 years) and male adult (65 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR461MDN
released
single cell RNA-seq
of pancreatic cell
Homo sapiens
pancreatic cell female adult (51 year) and male adult (17 years) and male adult (38 years)
Lab:
AMP-T2D consortium
Project:
AMP