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Assay category
4
Transcription
Assay
111
ATAC-seq
108
ChIP-seq
30
pCHi-C
23
total RNA-seq
15
Hi-C
10
RRBS
8
snATAC-seq
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
DNase-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
4
AMP
RFA
HPAP
4
AMP
Experiment status
4
released
Organism
4
Homo sapiens
Biosample type
tissue
2
in vitro differentiated cells
2
primary cell
Life stage
2
adult
2
unknown
Available data
99
tsv
bam
97
bigWig
91
fastq
2
csv
Platform
2
Illumina HiSeq 2500
Run type
2
paired-ended
Read length (nt)
2
97
1
99
1
105
1
110
1
147
Library made from
4
RNA
Date released
2
December, 2019
1
November, 2018
1
September, 2018
Lab
4
AMP-T2D consortium
Replication type
2
isogenic
1
anisogenic
1
unreplicated
Audit category:
2
audit script error
2
inconsistent ontology term
award.rfa!
HPAP
biosample_type!
tissue
files.file_type!
bam
month_released!
August, 2018
Showing 4 of 4 results
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Experiment
DSR690SBQ
released
Audit error
2
single cell RNA-seq
of cardiomyocytes (cardiac muscle cell)
Homo sapiens
cardiomyocytes (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR054HMA
released
Audit error
2
single cell RNA-seq
of cardiomyocytes (cardiac muscle cell)
Homo sapiens
cardiomyocytes (cardiac muscle cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR728QVV
released
single cell RNA-seq
of pancreatic cell
Homo sapiens
pancreatic cell female adult (59 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR461MDN
released
single cell RNA-seq
of pancreatic cell
Homo sapiens
pancreatic cell female adult (51 year) and male adult (17 years) and male adult (38 years)
Lab:
AMP-T2D consortium
Project:
AMP