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Assay category
7
Transcription
Assay
1286
total RNA-seq
1116
ChIP-seq
336
ATAC-seq
274
single cell RNA-seq
163
DNase-seq
87
RNA microarray
72
snATAC-seq
67
WGBS
15
Hi-C
8
pCHi-C
7
small RNA-seq
5
GRO-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
FAIRE-seq
1
MPRA
1
STARR-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
snDrop-seq
1
whole genome sequencing assay
Project
7
AMP
RFA
7
AMP
Experiment status
7
released
Genome assembly (visualization)
7
GRCh38
7
hg19
Organism
7
Homo sapiens
Biosample type
7
tissue
Organ
3
liver
2
adipose tissue
2
connective tissue
2
pancreas
Life stage
6
adult
1
embryonic
Available data
7
bam
7
bigWig
7
tsv
Library made from
7
RNA
Date released
7
July, 2019
Lab
7
AMP-T2D consortium
Replication type
11
anisogenic
7
unreplicated
assay_title!
CRISPR genome editing followed by sgRNA sequencing
lab.title!
Stephen Parker, UMich
Showing 7 of 7 results
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Experiment
DSR322WAZ
released
small RNA-seq
of subcutaneous adipose tissue
Homo sapiens
subcutaneous adipose tissue female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR043CMH
released
small RNA-seq
of right lobe of liver
Homo sapiens
right lobe of liver female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR467AXQ
released
small RNA-seq
of right lobe of liver
Homo sapiens
right lobe of liver female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR882SMA
released
small RNA-seq
of omental fat pad
Homo sapiens
omental fat pad male adult (37 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR494RGE
released
small RNA-seq
of liver
Homo sapiens
liver female embryo (20 weeks)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR562PEN
released
small RNA-seq
of body of pancreas
Homo sapiens
body of pancreas female adult (51 year)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR089OIU
released
small RNA-seq
of body of pancreas
Homo sapiens
body of pancreas female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP