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Assay category
5
DNA accessibility
Assay
190
total RNA-seq
180
ChIP-seq
105
ATAC-seq
89
single cell RNA-seq
28
pCHi-C
27
DNase-seq
11
small RNA-seq
9
Hi-C
5
snATAC-seq
3
FAIRE-seq
2
Capture-C
2
MeRIP-seq
2
snDrop-seq
1
DNAme array
Project
4
T1D
1
AMP
RFA
4
T1D
1
AMP
Experiment status
5
released
Genome assembly (visualization)
1
hg19
Organism
5
Homo sapiens
Biosample type
3
tissue
2
primary cell
Organ
2
blood
2
bodily fluid
2
pancreas
1
musculature of body
Life stage
3
unknown
2
adult
Available data
1
bed bed3+
1
txt
Library made from
5
DNA
Date released
2
February, 2023
2
January, 2021
1
May, 2022
Lab
4
Kyle Gaulton, UCSD
1
AMP-T2D consortium
Replication type
72
unreplicated
7
isogenic
5
anisogenic
Audit category:
1
audit script error
files.file_type!
tagAlign bed3+
target.investigated_as!
nucleotide modification
Showing 5 of 5 results
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Experiment
DSR127IDO
released
Audit error
1
snATAC-seq
of skeletal muscle tissue
Homo sapiens
skeletal muscle tissue
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR897PVF
released
snATAC-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (59 years) and male adult (26 years) and male adult (61 year)
Lab:
Kyle Gaulton, UCSD
Project:
T1D
Experiment
DSR162EWO
released
snATAC-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (59 years) and male adult (26 years) and male adult (27 years) and male adult (61 year)
Lab:
Kyle Gaulton, UCSD
Project:
T1D
Experiment
DSR294OVU
released
snATAC-seq
of peripheral blood mononuclear cell
Homo sapiens
peripheral blood mononuclear cell male
Lab:
Kyle Gaulton, UCSD
Project:
T1D
Experiment
DSR247GCT
released
snATAC-seq
of peripheral blood mononuclear cell
Homo sapiens
peripheral blood mononuclear cell male
Lab:
Kyle Gaulton, UCSD
Project:
T1D