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Schema
Citing CMDGA
Clear Filters
Annotation type
4
gene expression
1
accessible chromatin
Annotation Category
4
Gene expression levels
1
cis-regulatory elements
Annotation type Category
3
snDropSeq
1
scRNA-seq
1
snATAC-seq
Available data
4
tsv
4
txt
1
bed bed3+
1
bigWig
File set status
5
released
Genome assembly (visualization)
GRCh38
11
hg19
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
46
CD8-positive, alpha-beta T cell
41
common myeloid progenitor, CD34-positive
28
B cell
28
monocyte
27
CD14-positive monocyte
23
CD4-positive, alpha-beta memory T cell
21
epithelial cell of proximal tubule
21
regulatory T cell
19
T-helper 1 cell
19
endothelial cell
19
glomerular endothelial cell
17
T-helper 17 cell
16
hepatocyte
15
CD8-positive, alpha-beta memory T cell
15
endothelial cell of umbilical vein
15
foreskin fibroblast
15
foreskin keratinocyte
14
mononuclear cell
14
natural killer cell
14
skeletal muscle myoblast
14
trophoblast cell
13
CD4-positive, alpha-beta T cell
13
T-helper 2 cell
13
fibroblast of lung
13
mammary epithelial cell
13
osteoblast
13
pancreatic ductal cell
12
neutrophil
11
keratinocyte
11
naive thymus-derived CD4-positive, alpha-beta T cell
10
T cell
10
bronchial epithelial cell
10
glomerular visceral epithelial cell
10
neurosphere
10
pancreatic alpha cell
10
pancreatic beta cell
10
pancreatic delta cell
9
fibroblast of dermis
9
mature neutrophil
9
pancreatic acinar cell
8
dermis blood vessel endothelial cell
8
mammary gland epithelial cell
7
epithelial cell of prostate
7
fibroblast
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
kidney tubule cell
7
retinal pigment epithelial cell
7
skeletal muscle satellite cell
7
smooth muscle cell
6
CD1c-positive myeloid dendritic cell
6
T-cell
6
alternatively activated macrophage
6
astrocyte
6
cardiac muscle cell
6
erythroblast
6
fibroblast of breast
6
fibroblast of cardiac tissue
6
gamma-delta T cell
6
hepatic stellate cell
6
kidney glomerular epithelial cell
6
macrophage
6
mesenchymal stem cell
6
myoepithelial cell of mammary gland
6
naive T cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
pancreatic stellate cell
6
peripheral blood mononuclear cell
6
pulmonary artery endothelial cell
6
renal cortical epithelial cell
6
skeletal muscle fiber
5
CD14-positive, CD16-negative classical monocyte
5
central memory CD8-positive, alpha-beta T cell
5
choroid plexus epithelial cell
5
effector memory CD8-positive, alpha-beta T cell
5
epithelial cell of esophagus
5
foreskin melanocyte
5
inflammatory macrophage
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
memory B cell
5
mesangial cell
5
pancreatic endothelial cell
5
skin fibroblast
5
tracheal epithelial cell
5
type I muscle cell
5
type II muscle cell
4
T follicular helper cell
4
acute myeloid leukemia cell
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
cardiac fibroblast
4
dermis lymphatic vessel endothelial cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
fibroblast of peridontal ligament
4
glutamatergic neuron
4
iris pigment epithelial cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
lung microvascular endothelial cell
4
mast cell
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
myofibroblast cell
4
naive B cell
4
nephron progenitor
4
non-pigmented ciliary epithelial cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
4
plasma cell
4
preadipocyte
4
renal epithelial cell
4
skeletal muscle cell
4
smooth muscle cell of the brain vasculature
4
vascular associated smooth muscle cell
3
Ishikawa
3
S-shaped body
3
Schwann cell
3
Th1 cell
3
Th17 cell
3
adipocyte
3
aortic endothelial cell
3
astrocyte of the spinal cord
3
bone marrow cell
3
brain microvascular endothelial cell
3
enterocyte
3
erythroid cell
3
fibroblast of gingiva
3
fibroblast of the aortic adventitia
3
fibroblast of the conjunctiva
3
kidney capillary endothelial cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
meso-epithelial cell
3
mononuclear cell of bone marrow
3
myotube
3
naive regulatory T cell
3
neoplastic cell
3
pancreatic quiescent stellate cell
3
peripheral blood stem cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
stromal cell of bone marrow
2
cardiac fibroblast
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
CD4-positive helper T cell
2
CD4-positive, CD25-positive, alpha-beta regulatory T cell
2
Kupffer cell
2
Rhabdoid Tumor of the Kidney
2
Th2 cell
2
amnion mesenchymal stem cell
2
amniotic stem cell
2
basal cell
2
brain pericyte
2
cardiac muscle myoblast
2
chronic lymphocytic leukemia cell
2
columnar chondrocyte
2
dermis microvascular lymphatic vessel endothelial cell
2
effector memory CD4-positive, alpha-beta T cell
2
endothelial cell of coronary artery
2
epidermal melanocyte
2
epithelial cell of amnion
2
erythroid progenitor cell
2
glial cell
2
goblet cell
2
head and neck squamous cell carcinoma
2
kidney inner medulla collecting duct intercalated cell
2
leukemic stem cell
2
luminal epithelial cell of mammary gland
2
mammary stem cell
2
mantle cell lymphoma cell
2
myeloid dendritic cell
2
naive B cel
2
neural cell
2
neuronal stem cell
2
pancreatic endocrine cell
2
pericyte cell
2
peripheral blood-derived erythroblast
2
primordial germ cell
2
prostate gland cancer cell
Organ
5
epithelium
5
kidney
Life stage
5
adult
Date released
3
February, 2021
2
August, 2021
Software used
4
r
1
macs
1
seurat
Lab
3
AMP-T2D consortium
2
Katalin Susztak, Upenn
Project
5
AMP
RFA
3
AMP
2
AMP2
assembly!
GRCh38
biosample_term_name!
Proximal Tubule Epithelial Cell Segment 1 and 2
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR926ZNY
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Distal Convoluted Tubule from GSE121862 snDropSeq kidney regions (medulla)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR683CUH
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Distal Convoluted Tubule from GSE121862 snDropSeq kidney regions (cortex)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR149YFI
released
Annotation file set
: Gene expression of kidney from Katalin Susztak FNIH Project scRNA-seq for kidney distal convoluted tubule epithelial cell
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR197RLC
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Distal convoluted tubule
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR919NVL
released
Annotation file set
: Gene expression levels (pseudobulks UMI) of kidney Distal Convoluted Tubule from GSE121862 snDropSeq kidney regions (cortex and medulla)
Lab:
AMP-T2D consortium
Project:
AMP