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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
candidate regulatory elements
2
target gene predictions
1
caQTL
1
eQTL
Annotation Category
4
cis-regulatory elements
2
Genetic variant effects
2
Target gene links
Annotation type Category
4
DNase-seq
3
ChIP-seq
3
snATAC-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
Available data
8
bed bed3+
1
bigWig
File set status
8
released
Genome assembly (visualization)
11
hg19
GRCh38
Organism
8
Homo sapiens
Biosample type
4
cell line
4
primary cell
Biosample term
50
muscle of arm
42
muscle of leg
41
muscle of back
16
psoas muscle
14
gastrocnemius medialis
13
muscle of trunk
13
skeletal muscle tissue
8
esophagus muscularis mucosa
7
stomach smooth muscle
6
LHCN-M2
6
gastroesophageal sphincter
6
skeletal muscle satellite cell
5
myotube
4
A673
4
SJCRH30
4
skeletal muscle cell
4
skeletal muscle fiber
4
type I muscle cell
4
type II muscle cell
3
rectum smooth muscle tissue
2
muscle of leg
2
cardiac muscle myoblast
2
respiratory system smooth muscle
2
skeletal muscle
2
somatic muscle myotube
1
hindlimb muscle
1
aortic smooth muscle cell
1
esophagus - gastroesophageal junction
1
esophagus - muscularis
1
forelimb muscle
1
gastrocnemius medialis(Muscle - Skeletal)
1
hindlimb muscle
1
left ventricle myocardium
1
rectal smooth muscle tissue
1
smooth muscle tissue
Disease term
2
Ewing sarcoma
Organ
8
musculature of body
Life stage
2
child
1
unknown
1
young adult
Date released
2
February, 2024
2
September, 2022
1
February, 2021
1
May, 2021
1
May, 2022
1
October, 2022
Software used
3
r
2
macs
1
abc
1
deeptools
1
eigenmt
1
encode-ccres
1
qTLtools
1
rasqual
1
samtools
umitools
Lab
4
AMP-T2D consortium
3
Stephen Parker, UMich
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
5
AMP
3
AMP2
assembly!
GRCh38
software_used.software.name!
umitools
Showing 8 of 8 results
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Download
FileSet
DSR538XCP
released
Annotation file set
: Candidate regulatory elements for BSS00035 A673 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR887BDZ
released
Annotation file set
: Target gene predictions for BSS00035 A673 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR331TEA
released
Annotation file set
: Accessible chromatin from snATAC-seq of type II muscle cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR958EYW
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE A673
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR273WHL
released
Annotation file set
: Chromatin site QTLs of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR829NMX
released
Annotation file set
: Expression QTLs of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR816KKF
released
Annotation file set
: Cell type chromatin broad peaks and bw of type II muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR293FCZ
released
Annotation file set
: enhancer-gene predicton of A673-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP