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Schema
Citing CMDGA
Clear Filters
Annotation type
4
target gene predictions
3
candidate regulatory elements
1
binding sites
Annotation Category
4
Target gene links
4
cis-regulatory elements
Annotation type Category
6
ChIP-seq
6
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
10
hg19
GRCh38
Organism
8
Homo sapiens
Biosample type
4
in vitro differentiated cells
3
cell line
1
stem cell
Biosample term
62
heart
62
stomach
52
kidney
51
lung
50
muscle of arm
47
brain
46
adrenal gland
46
small intestine
41
A549
41
common myeloid progenitor, CD34-positive
41
large intestine
41
muscle of back
41
muscle of leg
41
placenta
39
left lung
34
liver
34
thymus
33
islet of Langerhans
33
right lung
31
right kidney
30
hematopoietic multipotent progenitor cell
30
renal cortex interstitium
29
B cell
29
renal pelvis
27
CD14-positive monocyte
27
left kidney
23
CD4-positive, alpha-beta memory T cell
23
monocyte
23
spleen
22
adipose tissue
22
spinal cord
21
epithelial cell of proximal tubule
20
heart left ventricle
18
T-helper 1 cell
18
glomerular endothelial cell
18
regulatory T cell
17
CD8-positive, alpha-beta T cell
17
T-helper 17 cell
17
adipocyte
17
induced pluripotent stem cell
16
K562
16
MCF-7
16
body of pancreas
16
hepatocyte
16
neural progenitor cell
16
sigmoid colon
15
CD8-positive, alpha-beta memory T cell
15
endothelial cell
15
foreskin keratinocyte
15
ovary
15
trophoblast cell
14
natural killer cell
14
psoas muscle
13
CD4-positive, alpha-beta T cell
13
EndoC_BH1
13
H1-hESC
13
T-helper 2 cell
13
endothelial cell of umbilical vein
13
fibroblast of lung
13
heart right ventricle
13
mononuclear cell
13
subcutaneous adipose tissue
13
tibial nerve
13
transverse colon
12
chorionic villus
12
foreskin fibroblast
12
gastrocnemius medialis
12
muscle of trunk
12
skeletal muscle tissue
12
thyroid gland
11
T cell
11
cardiac muscle cell
11
cardiomyocytes
11
caudate nucleus
11
endocrine pancreas
11
pancreatic ductal cell
11
retina
11
skeletal muscle myoblast
10
HeLa-S3
10
Peyer's patch
10
mesenchymal stem cell
10
neutrophil
10
pancreas
10
testis
9
H9
9
aorta
9
coronary artery
9
extended pluripotent stem (EPS) cells
9
fibroblast of dermis
9
neurosphere
9
pancreatic beta cell
9
smooth muscle cell
8
HepG2
8
SK-N-SH
8
ascending aorta
8
breast epithelium
8
cardiomyocytes (cardiac muscle cell)
8
dermis blood vessel endothelial cell
8
esophagus squamous epithelium
8
glomerular visceral epithelial cell
8
layer of hippocampus
8
left renal cortex interstitium
8
naive thymus-derived CD4-positive, alpha-beta T cell
8
omental fat pad
8
pancreatic delta cell
8
pituitary stalk
8
progenitor cell of endocrine pancreas
8
right renal pelvis
8
upper lobe of left lung
7
cerebellum
7
cingulate gyrus
7
colonic mucosa
7
dendritic cell
7
duodenal mucosa
7
embryonic stem cell
7
epithelial cell of prostate
7
esophagus
7
esophagus muscularis mucosa
7
fibroblast
7
frontal cortex
7
keratinocyte
7
left renal pelvis
7
lower leg skin
7
pancreatic acinar cell
7
pancreatic alpha cell
7
right atrium auricular region
7
temporal lobe
6
22Rv1
6
GM12878
6
SK-N-DZ
6
T-cell
6
WI38
6
alternatively activated macrophage
6
angular gyrus
6
bronchial epithelial cell
6
cardiac precursors (cardiac muscle cell)
6
chorion membrane
6
endodermal cell
6
endometrium adenocarcinoma
6
erythroblast
6
eye
6
fibroblast of breast
6
fibroblast of cardiac tissue
6
gamma-delta T cell
6
immortal human breast epithelial cell line cell
6
macrophage
6
mammary gland epithelial cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
parathyroid adenoma
6
right renal cortex interstitium
6
substantia nigra
6
thoracic aorta
6
tibial artery
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
Ammon's horn
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
HEK293
5
IMR-90
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
LNCaP clone FGC
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
Life stage
3
embryonic
2
newborn
Date released
4
September, 2022
1
February, 2021
1
March, 2020
1
May, 2021
1
October, 2022
Software used
macs
4
r
1
abc
1
chromhmm
1
encode-ccres
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
assembly!
GRCh38
software_used.software.name!
macs
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR686XLF
released
Annotation file set
: Binding sites annotation for BJ cell (BJ) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR006UKO
released
Annotation file set
: Candidate regulatory elements for BSS00113 BJ cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR190OGJ
released
Annotation file set
: Target gene predictions for BSS00113 BJ cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP