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Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
Annotation Category
3
cis-regulatory elements
Annotation type Category
2
ATAC-seq
1
snATAC-seq
Available data
58
bed bed3+
3
bigWig
1
bed bed9+
File set status
3
released
Genome assembly (visualization)
4
hg19
GRCh38
Organism
1
Homo sapiens
Biosample type
3
primary cell
Biosample term
15
retina
13
pigmented layer of retina
5
pancreatic alpha cell
5
pancreatic beta cell
5
pancreatic delta cell
3
B cell
3
CD8-positive, alpha-beta T cell
3
endothelial cell
3
memory B cell
3
monocyte
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
natural killer cell
3
pancreatic polypeptide-secreting cell
3
regulatory T cell
2
SGBS preadipocytes
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
aortic endothelial cell
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
extracellular matrix secreting cell
2
gamma-delta T cell
2
macrophage
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
pancreatic acinar cell
2
pancreatic ductal cell
2
pancreatic stellate cell
2
plasmacytoid dendritic cell
2
retinal pigment epithelial cell
1
T cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipocyte
1
adipose tissue
1
basal cell
1
ciliated cell
1
club cell
1
conventional dendritic cell
1
endothelial cell of artery
1
endothelial cell of lymphatic vessel
1
erythrocyte
1
glomerular visceral epithelial cell
1
immature natural killer cell
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
leukocyte
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
megakaryocyte
1
mesenchymal stem cell
1
myeloid dendritic cell
1
myofibroblast cell
1
naive regulatory T cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neuroendocrine cell
1
non-classical monocyte
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pericyte cell
1
plasma cell
1
proximal tubule cells with injury markers
1
renal intercalated cell
1
renal principal cell
1
skeletal muscle myoblast
1
skeletal muscle satellite cell
1
smooth muscle cell
1
stellate neuron
1
type I muscle cell
1
type I pneumocyte
1
type II muscle cell
1
type II pneumocyte
Date released
2
May, 2020
1
January, 2021
Software used
1
macs
Lab
2
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
2
AMP
1
T1D
RFA
2
AMP
1
T1D
assembly!
GRCh38
software_used.software.name!
r
Showing 3 of 3 results
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Download
FileSet
DSR805RPA
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR590HEP
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR935PWD
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP