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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
3
target gene predictions
1
binding sites
Annotation Category
5
cis-regulatory elements
3
Target gene links
Annotation type Category
7
ChIP-seq
7
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
10
hg19
GRCh38
Organism
8
Homo sapiens
Biosample type
8
cell line
Biosample term
52
brain
13
caudate nucleus
12
layer of hippocampus
10
pituitary stalk
10
substantia nigra
10
temporal lobe
8
SK-N-DZ
8
SK-N-SH
8
cerebellum
8
choroid plexus epithelial cell
8
frontal cortex
7
SK-N-MC
7
cingulate gyrus
7
putamen
6
Ammon's horn
6
BE(2)-C
6
angular gyrus
6
globus pallidus
6
midbrain
5
Daoy
4
A172
4
Brodmann (1909) area 46
4
M059J
4
U-87 MG
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
medulla oblongata
4
middle frontal gyrus
4
pons
3
H54
3
brain microvascular endothelial cell
3
brain pericyte
3
cerebellar cortex
3
inferior parietal cortex
3
medulloblastoma
3
prefrontal cortex
2
cardiac fibroblast
2
amygdala
2
cerebellum (Hemisphere)
2
dorsolateral prefrontal cortex
2
hypothalamus
2
middle frontal area 46
2
nucleus accumbens
1
brain microvascular endothelial cell
1
BE2C
1
Brodmann (1909) area 9
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Glioblastoma
1
anterior cingulate cortex
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
cardiac fibroblast
1
claustrum of brain
1
dentate nucleus
1
diencephalon
1
dorsal lateral geniculate nucleus
1
dura mater
1
entorhinal cortex
1
frontal pole
1
hippocampal neuron
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
mid-frontal lobe
1
myelencephalon
1
nucleus of ventral thalamus
1
paraventricular nucleus of hypothalamus
1
pineal body
1
piriform cortex
1
pituitary
1
pituitary gland
1
pontine tegmentum
1
precentral gyrus
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
septal nuclear complex
1
subiculum
1
superior parietal cortex
1
temporal pole
1
thalamic complex
1
undifferentiated ESC (H9 cell line)
Disease term
4
neuroblastoma
Organ
8
brain
Life stage
4
child
2
young adult
Date released
4
September, 2022
2
February, 2021
1
May, 2021
1
October, 2022
Software used
4
r
2
encode-ccres
1
abc
1
chromhmm
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
assembly!
GRCh38
organ_slims!
spleen
Showing 8 of 8 results
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Download
FileSet
DSR744HBG
released
Annotation file set
: Binding sites annotation for SK-N-SH (SK-N-SH) for GOLDENPATH ENCODE DCC
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR277GGH
released
Annotation file set
: Candidate regulatory elements for BSS01571 SK-N-SH from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR410LTV
released
Annotation file set
: Candidate regulatory elements for BSS01562 SK-N-SH from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR237PDC
released
Annotation file set
: Target gene predictions for BSS01571 SK-N-SH from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR022HYM
released
Annotation file set
: Target gene predictions for BSS01562 SK-N-SH from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR955YDG
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE SK-N-SH
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR096VBD
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE SK-N-SH
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR266GVV
released
Annotation file set
: enhancer-gene predicton of SK-N-SH-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP