Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
gene expression
1
histone modifications
1
target gene predictions
Annotation Category
1
Gene expression levels
1
Target gene links
1
cis-regulatory elements
Annotation type Category
1
Capture-C
1
ChIP-seq
1
RNA-seq
Available data
2
bed bed3+
1
tsv
File set status
3
released
Genome assembly (visualization)
6
hg19
GRCh38
Organism
3
Homo sapiens
Biosample type
2
tissue
1
stem cell
Biosample term
52
brain
13
caudate nucleus
12
layer of hippocampus
10
pituitary stalk
10
substantia nigra
10
temporal lobe
8
SK-N-DZ
8
SK-N-SH
8
cerebellum
8
choroid plexus epithelial cell
8
frontal cortex
7
SK-N-MC
7
cingulate gyrus
7
putamen
6
Ammon's horn
6
BE(2)-C
6
angular gyrus
6
globus pallidus
6
midbrain
5
Daoy
4
A172
4
Brodmann (1909) area 46
4
M059J
4
U-87 MG
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
medulla oblongata
4
middle frontal gyrus
4
pons
3
H54
3
brain microvascular endothelial cell
3
brain pericyte
3
cerebellar cortex
3
inferior parietal cortex
3
medulloblastoma
3
prefrontal cortex
2
cardiac fibroblast
2
amygdala
2
cerebellum (Hemisphere)
2
dorsolateral prefrontal cortex
2
hypothalamus
2
middle frontal area 46
2
nucleus accumbens
1
brain microvascular endothelial cell
1
BE2C
1
Brodmann (1909) area 9
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Glioblastoma
1
anterior cingulate cortex
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
cardiac fibroblast
1
claustrum of brain
1
dentate nucleus
1
diencephalon
1
dorsal lateral geniculate nucleus
1
dura mater
1
entorhinal cortex
1
frontal pole
1
hippocampal neuron
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
mid-frontal lobe
1
myelencephalon
1
nucleus of ventral thalamus
1
paraventricular nucleus of hypothalamus
1
pineal body
1
piriform cortex
1
pituitary
1
pituitary gland
1
pontine tegmentum
1
precentral gyrus
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
septal nuclear complex
1
subiculum
1
superior parietal cortex
1
temporal pole
1
thalamic complex
1
undifferentiated ESC (H9 cell line)
Organ
3
brain
Life stage
1
adult
Date released
1
February, 2021
1
January, 2020
1
September, 2023
Software used
1
chicago
1
macs
1
r
Lab
2
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Project
3
AMP
RFA
2
AMP
1
AMP2
assembly!
GRCh38
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
FileSet
DSR843RXV
released
Annotation file set
: Target gene annotation of open chromatin regions from promoter capture c of ESC (1frag and 4 frag)
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR925ZOW
released
Annotation file set
: Histone modifications annotation for Neural Amygdala from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR737OYG
released
Annotation file set
: Gene expression summary of TPM of brain amygdala from GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP