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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
target gene predictions
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
4
DNase-seq
3
ChIP-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
6
hg19
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
52
brain
13
caudate nucleus
12
layer of hippocampus
10
pituitary stalk
10
substantia nigra
10
temporal lobe
9
esophagus squamous epithelium
8
SK-N-DZ
8
SK-N-SH
8
cerebellum
8
choroid plexus epithelial cell
8
esophagus muscularis mucosa
8
frontal cortex
7
SK-N-MC
7
cingulate gyrus
7
esophagus
7
putamen
6
Ammon's horn
6
BE(2)-C
6
angular gyrus
6
dermis lymphatic vessel endothelial cell
6
globus pallidus
6
midbrain
5
Daoy
5
Lymphatic Endothelial Cell
5
epithelial cell of esophagus
4
A172
4
Brodmann (1909) area 46
4
M059J
4
U-87 MG
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
dermis microvascular lymphatic vessel endothelial cell
4
medulla oblongata
4
middle frontal gyrus
4
pons
3
H54
3
brain microvascular endothelial cell
3
brain pericyte
3
cerebellar cortex
3
inferior parietal cortex
3
medulloblastoma
3
prefrontal cortex
2
cardiac fibroblast
2
amygdala
2
cerebellum (Hemisphere)
2
dorsolateral prefrontal cortex
2
hypothalamus
2
middle frontal area 46
2
nucleus accumbens
1
brain microvascular endothelial cell
1
BE2C
1
Brodmann (1909) area 9
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
Glioblastoma
1
anterior cingulate cortex
1
anterior parahippocampal gyrus
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
cardiac fibroblast
1
claustrum of brain
1
dentate nucleus
1
diencephalon
1
dorsal lateral geniculate nucleus
1
dura mater
1
endothelial cell of lymphatic vessel
1
entorhinal cortex
1
esophagus - mucosa
1
esophagus - muscularis
1
frontal pole
1
hippocampal neuron
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
mid-frontal lobe
1
myelencephalon
1
nucleus of ventral thalamus
1
paraventricular nucleus of hypothalamus
1
pineal body
1
piriform cortex
1
pituitary
1
pituitary gland
1
pontine tegmentum
1
precentral gyrus
1
pulvinar nucleus
1
raphe nuclei
1
red nucleus
1
septal nuclear complex
1
subiculum
1
superior parietal cortex
1
temporal pole
1
thalamic complex
1
undifferentiated ESC (H9 cell line)
Organ
4
brain
0
esophagus
0
lymphatic vessel
Life stage
3
unknown
Date released
2
September, 2022
1
February, 2021
1
May, 2020
Software used
2
r
1
deltasvm
1
encode-ccres
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
assembly!
GRCh38
Showing 4 of 4 results
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Download
FileSet
DSR489AIN
released
Annotation file set
: Candidate regulatory elements for BSS00091 astrocyte of the hippocampus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR113KBA
released
Annotation file set
: Target gene predictions for BSS00091 astrocyte of the hippocampus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR990VSV
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE astrocyte of the hippocampus
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR565ZWS
released
Annotation file set
: Genetic variants with deltaSVM predictions in brain hippocampus astrocyte DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP