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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
2
gene expression
Annotation Category
3
cis-regulatory elements
2
Gene expression levels
Annotation type Category
3
ATAC-seq
2
RNA-seq
Available data
3
bed bed3+
3
bigWig
2
tsv
File set status
5
released
Genome assembly (visualization)
3
hg19
Organism
2
Homo sapiens
Biosample type
5
primary cell
Biosample term
46
CD8-positive, alpha-beta T cell
41
common myeloid progenitor, CD34-positive
29
B cell
28
monocyte
27
CD14-positive monocyte
23
CD4-positive, alpha-beta memory T cell
21
epithelial cell of proximal tubule
21
regulatory T cell
19
T-helper 1 cell
19
endothelial cell
19
glomerular endothelial cell
17
T-helper 17 cell
16
hepatocyte
15
CD8-positive, alpha-beta memory T cell
15
endothelial cell of umbilical vein
15
foreskin fibroblast
15
foreskin keratinocyte
15
natural killer cell
14
mononuclear cell
14
skeletal muscle myoblast
14
trophoblast cell
13
CD4-positive, alpha-beta T cell
13
T-helper 2 cell
13
fibroblast of lung
13
mammary epithelial cell
13
osteoblast
12
neutrophil
11
T cell
11
keratinocyte
11
naive thymus-derived CD4-positive, alpha-beta T cell
10
bronchial epithelial cell
10
glomerular visceral epithelial cell
10
neurosphere
9
fibroblast of dermis
9
mature neutrophil
8
dermis blood vessel endothelial cell
8
mammary gland epithelial cell
8
pancreatic ductal cell
7
epithelial cell of prostate
7
fibroblast
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
kidney interstitial cell
7
kidney loop of Henle thin ascending limb epithelial cell
7
kidney tubule cell
7
macrophage
7
retinal pigment epithelial cell
7
skeletal muscle satellite cell
7
smooth muscle cell
6
CD1c-positive myeloid dendritic cell
6
T-cell
6
alternatively activated macrophage
6
astrocyte
6
cardiac muscle cell
6
erythroblast
6
fibroblast of breast
6
fibroblast of cardiac tissue
6
gamma-delta T cell
6
hepatic stellate cell
6
kidney glomerular epithelial cell
6
mesenchymal stem cell
6
myoepithelial cell of mammary gland
6
naive T cell
6
naive thymus-derived CD8-positive, alpha-beta T cell
6
peripheral blood mononuclear cell
6
pulmonary artery endothelial cell
6
renal cortical epithelial cell
6
skeletal muscle fiber
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
central memory CD8-positive, alpha-beta T cell
5
choroid plexus epithelial cell
5
effector memory CD8-positive, alpha-beta T cell
5
epithelial cell of esophagus
5
foreskin melanocyte
5
inflammatory macrophage
5
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
5
kidney epithelial cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
memory B cell
5
mesangial cell
5
myofibroblast cell
5
skin fibroblast
5
tracheal epithelial cell
5
type I muscle cell
5
type II muscle cell
4
T follicular helper cell
4
acute myeloid leukemia cell
4
adult endothelial progenitor cell
4
aortic adventitial fibroblast
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
cardiac fibroblast
4
dermis lymphatic vessel endothelial cell
4
effector CD4-positive, alpha-beta T cell
4
effector T cell
4
fibroblast of peridontal ligament
4
glutamatergic neuron
4
iris pigment epithelial cell
4
kidney connecting tubule epithelial cell
4
leukocyte
4
lung microvascular endothelial cell
4
mast cell
4
mature natural killer cell
4
memory T cell
4
memory regulatory T cell
4
naive B cell
4
nephron progenitor
4
non-pigmented ciliary epithelial cell
4
pancreatic acinar cell
4
plasma cell
4
preadipocyte
4
renal epithelial cell
4
skeletal muscle cell
4
smooth muscle cell of the brain vasculature
4
vascular associated smooth muscle cell
3
Cycling Mononuclear Phagocyte
3
Ishikawa
3
Mast Cell
3
S-shaped body
3
Schwann cell
3
Th1 cell
3
Th17 cell
3
adipocyte
3
aortic endothelial cell
3
astrocyte of the spinal cord
3
basal cell
3
bone marrow cell
3
brain microvascular endothelial cell
3
enterocyte
3
erythroid cell
3
fibroblast of gingiva
3
fibroblast of the aortic adventitia
3
fibroblast of the conjunctiva
3
kidney capillary endothelial cell
3
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
meso-epithelial cell
3
mononuclear cell of bone marrow
3
myotube
Date released
3
May, 2020
2
May, 2021
Software used
2
r
Lab
5
AMP-T2D consortium
Kyle Gaulton, UCSD
Project
5
AMP
RFA
5
AMP
assembly!
GRCh38
lab.title!
Kyle Gaulton, UCSD
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR118YKR
released
Annotation file set
: GSE118165 gene expression annotation of normal effector T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR062GGQ
released
Annotation file set
: GSE118165 gene expression annotation of LPS-stimulated effector T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR321ZSO
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal plasmacytoid dendritic cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR769QRO
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal effector T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR592XZT
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated effector T cell
Lab:
AMP-T2D consortium
Project:
AMP