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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
variant allelic effects
1
caQTL
1
eQTL
1
gene expression
1
target gene predictions
Annotation Category
4
Genetic variant effects
2
cis-regulatory elements
1
Gene expression levels
1
Target gene links
Annotation type Category
6
snATAC-seq
1
RNA-seq
1
snRNA-seq
Available data
7
bed bed3+
1
bigWig
File set status
8
released
Genome assembly (visualization)
27
hg19
GRCh38
Organism
8
Homo sapiens
Biosample type
8
primary cell
Biosample term
15
CD14-positive monocyte
11
adipocyte
10
pituitary stalk
8
endothelial cell
8
induced pluripotent stem cell
8
kidney
8
pancreatic acinar cell
8
pancreatic alpha cell
8
pancreatic beta cell
8
pancreatic delta cell
8
pancreatic ductal cell
7
macrophage
6
dendritic cell
6
fibroblast
6
pancreatic stellate cell
6
skeletal muscle fiber
6
smooth muscle cell
5
mesenchymal stem cell
4
CD8-positive, alpha-beta T cell
4
liver
4
myofibroblast cell
4
natural killer cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic endothelial cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
4
pancreatic mast cell
4
type I muscle cell
4
type II muscle cell
3
T cell
3
basal cell
3
enterocyte
3
islet of Langerhans
3
keratinocyte
3
monocyte
3
pancreatic quiescent stellate cell
2
B cell
2
BJAB cell
2
CD4-positive helper T cell
2
ESC derived cell line
2
EndoC_BH1
2
H1-hESC
2
HepG2
2
Jurkat
2
K562
2
MCF 10A cell
2
Schwann cell
2
T-cell
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
adrenal gland
2
capillary endothelial cell
2
cardiac muscle cell
2
conventional dendritic cell
2
endothelial cell of umbilical vein
2
epithelial cell of esophagus
2
extracellular matrix secreting cell
2
fibroblast of lung
2
glial cell
2
goblet cell
2
hepatocyte
2
leukocyte
2
mammary epithelial cell
2
megakaryocyte
2
memory B cell
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
neural cell
2
non-classical monocyte
2
pancreatic polypeptide-secreting cell
2
plasmacytoid dendritic cell
2
regulatory T cell
2
skeletal muscle myoblast
2
skeletal muscle satellite cell
2
stellate neuron
2
stomach
2
trophoblast cell
2
type II pneumocyte
2
vascular associated smooth muscle cell
1
A549
1
A673
1
B cell, CD19-positive
1
CD34-PB
1
CD56-positive, CD161-positive immature natural killer cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
GM12878
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
IMR-90
1
KARPAS-422 cell
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
Pancreatic islets
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
SK-N-SH
1
Satellite Cells, Skeletal Muscle
1
adipose tissue
1
astrocyte
1
beige adipocyte
1
bipolar neuron
1
body of pancreas
1
breast epithelium
1
bronchial goblet cell
1
cardiac ventricle
1
caudate nucleus
1
ciliated cell
1
cingulate gyrus
1
club cell
1
colonic mucosa
1
common myeloid progenitor, CD34-positive
1
coronary artery
1
cortical cell of adrenal gland
1
duodenal mucosa
1
embryonic stem cell
1
endothelial cell of artery
1
endothelial cell of lymphatic vessel
1
epithelial cell of prostate
1
erythroblast
1
erythrocyte
1
fibroblast of arm
1
fibroblast of dermis
1
foreskin fibroblast
1
gastrocnemius medialis
1
granulosa cell
1
iPS DF 19.11
1
large intestine
1
layer of hippocampus
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
mammary gland epithelial cell
1
mast cell
1
megakaryocyte-erythroid progenitor cell
1
mesendoderm
1
mesothelial cell
1
mid-frontal lobe
1
mucosa of rectum
1
muscle of leg
1
muscle of trunk
1
myotube
1
neuroendocrine cell
1
neuron cell of Hypothalamus (neuron)
1
neuronal stem cell
1
osteoblast
1
ovary
1
pancreas
1
pancreatic A cell
1
pancreatic endocrine cell
1
parietal cell
1
peptic cell
1
pericyte cell
1
placenta
1
psoas muscle
1
purified protein and synthetic DNA oligo binding assay
1
rectum smooth muscle tissue
1
sigmoid colon
1
skeletal muscle
1
small intestine
1
smooth muscle cell of the coronary artery
1
spinal cord
1
spleen
1
stomach smooth muscle
1
subcutaneous adipose tissue
1
substantia nigra
1
temporal lobe
1
thymus
1
thyroid follicular cell
1
thyroid gland
1
transverse colon
1
type B pancreatic cell
1
type I pneumocyte
1
undifferentiated ESC (H9 cell line)
1
uterus
1
white adipose tissue
Organ
8
epithelium
Life stage
adult
Date released
5
February, 2024
2
January, 2021
1
October, 2022
Software used
2
deltasvm
2
macs
1
cicero
1
deeptools
1
eigenmt
1
qTLtools
1
r
1
rasqual
1
samtools
1
umitools
Lab
AMP-T2D consortium
4
Stephen Parker, UMich
2
Bing Ren, UCSD
2
Kyle Gaulton, UCSD
Project
6
AMP
2
T1D
RFA
4
AMP2
2
AMP
2
T1D
assembly!
GRCh38
lab.title!
AMP-T2D consortium
relevant_life_stage!
adult
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR259FVK
released
Annotation file set
: Chromatin site QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR876MNY
released
Annotation file set
: Expression QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR264NGG
released
Annotation file set
: Cell type chromatin broad peaks and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR251UJD
released
Annotation file set
: Cell type gene expression mean TPM and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR035TOY
released
Annotation file set
: Variant allelic effects annotation of Endothelial cells (sub-type2) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR772CSM
released
Annotation file set
: Variant allelic effects annotation of Endothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR305VNP
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of endothelial
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR579LZJ
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of endothelial
Lab:
Kyle Gaulton, UCSD
Project:
T1D