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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
Annotation Category
2
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
DNase-seq
Available data
2
bed bed3+
1
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
31
CD8-positive, alpha-beta T cell
8
monocyte
7
endothelial cell
7
mammary epithelial cell
6
osteoblast
pancreatic ductal cell
5
foreskin fibroblast
5
regulatory T cell
5
tracheal epithelial cell
4
acute myeloid leukemia cell
4
bronchial epithelial cell
4
glutamatergic neuron
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
4
preadipocyte
3
CD1c-positive myeloid dendritic cell
3
Ishikawa
3
Th1 cell
3
Th17 cell
3
aortic adventitial fibroblast
3
aortic endothelial cell
3
bone marrow cell
3
erythroid cell
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
hepatocyte
3
keratinocyte
3
mononuclear cell of bone marrow
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neoplastic cell
3
peripheral blood stem cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary artery endothelial cell
3
pulmonary interstitial fibroblast
3
renal epithelial cell
3
retinal pigment epithelial cell
3
skeletal muscle myoblast
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
Rhabdoid Tumor of the Kidney
2
Th2 cell
2
cardiac muscle myoblast
2
chronic lymphocytic leukemia cell
2
columnar chondrocyte
2
endothelial cell of umbilical vein
2
erythroid progenitor cell
2
glomerular visceral epithelial cell
2
head and neck squamous cell carcinoma
2
hepatic stellate cell
2
leukemic stem cell
2
leukocyte
2
mantle cell lymphoma cell
2
mast cell
2
mature neutrophil
2
mesenchymal stem cell
2
meso-epithelial cell
2
myotube
2
natural killer cell
2
neuronal stem cell
2
neutrophil
2
pancreatic acinar cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
peripheral blood mononuclear cell
2
peripheral blood-derived erythroblast
2
plasma cell
2
primordial germ cell
2
prostate gland cancer cell
2
renal proximal tubule cell
2
skeletal muscle fiber
2
skeletal muscle satellite cell
2
small cell ovarian carcinoma cell
2
smooth muscle cell
2
somatic muscle myotube
2
trophoblast cell
2
type I muscle cell
2
type II muscle cell
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
Glioblastoma
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
T-helper 1 cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
acute myeloid leukemia
1
adipocyte
1
alveolar cell type II
1
aortic smooth muscle cell
1
astrocyte
1
bone cell
1
colorectal cancer
1
conventional dendritic cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
endothelial cell of coronary artery
1
fibroblast of peridontal ligament
1
gabaergic neuron
1
glial cell
1
glomerular endothelial cell
1
granulocyte
1
head and neck neoplasia
1
induced T-regulatory cell
1
intestinal epithelial cell
1
iris pigment epithelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney glomerular epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
kidney tubule cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary gland epithelial cell
1
megakaryocyte
1
memory B cell
1
meningioma cell
1
microglial cell/astrocyte
1
mononuclear cell
1
mycosis fungoides
1
myeloid leukocyte
1
myofibroblast cell
1
naive B cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neural cell
1
neural progenitor cell
1
neuron
1
neutrophil progenitor cell
1
non-classical monocyte
1
non-neuronal cell
1
non-pigmented ciliary epithelial cell
1
oligodendrocyte
1
pancreatic endocrine cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
peripheral blood
1
plasmacytoid dendritic cell
1
proximal tubule cells with injury markers
1
renal cortical epithelial cell
1
renal intercalated cell
1
renal principal cell
1
seminoma cell
1
skin fibroblast
1
somatic gonadal cell
1
sperm
1
stellate neuron
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
urinary bladder cancer cell
Organ
2
epithelium
2
kidney
Life stage
1
adult
Date released
1
August, 2021
1
June, 2020
Software used
7
r
2
macs
1
encode-ccres
Lab
1
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
2
AMP
RFA
1
AMP
1
AMP2
assembly!
GRCh38
biosample_term_name!
pancreatic ductal cell
Showing 2 of 2 results
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Download
FileSet
DSR884VIR
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Podocytes
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR012KGK
released
Annotation file set
: Accessible chromatin annotation for Kidney Glomerular visceral epithelial cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP