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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
1
binding sites
1
candidate regulatory elements
1
histone modifications
Annotation Category
4
cis-regulatory elements
2
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
7
hg19
GRCh38
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
stem cell
Biosample term
45
CD8-positive, alpha-beta T cell
28
retina
27
stomach
25
heart
24
islet of Langerhans
22
liver
20
breast cancer cell
20
kidney
20
pigmented layer of retina
19
CD14-positive monocyte
19
brain
18
adrenal gland
18
lung
18
muscle of arm
17
adipocyte
17
embryonic stem cell
17
placenta
17
small intestine
16
large intestine
15
B cell
15
common myeloid progenitor, CD34-positive
15
monocyte
15
muscle of back
15
muscle of leg
14
EndoC_BH1
14
thymus
13
left lung
13
spinal cord
12
foreskin fibroblast
12
hematopoietic multipotent progenitor cell
12
mammary epithelial cell
12
neuroblastoma cell
12
renal cortex interstitium
12
right lung
11
MCF-7
11
cardiac muscle cell
11
endothelial cell
11
renal pelvis
11
spleen
10
CD4-positive, alpha-beta T cell
10
Rhabdomyosarcoma
10
gastric cancer cell
10
heart left ventricle
10
keratinocyte
10
macrophage
10
naive thymus-derived CD4-positive, alpha-beta T cell
10
neuronal stem cell
10
pancreas
10
retinal pigment epithelial cell
9
HepG2
9
adipose tissue
9
diffuse intrinsic pontine glioma
9
endothelial cell of umbilical vein
9
liposarcoma
9
mesenchymal stem cell
9
natural killer cell
9
right kidney
9
skeletal muscle myoblast
9
subcutaneous adipose tissue
8
A549
8
B-lymphoblastoid cell line
8
fibroblast
8
fibroblast cell line
8
foreskin keratinocyte
8
osteoblast
8
pituitary stalk
7
GM12878
7
H9
7
Jurkat
7
K562
7
esophageal adenocarcinoma
7
neural progenitor cell
7
pancreatic beta cell
7
pancreatic ductal cell
7
regulatory T cell
6
Chondroid Chordoma
6
H1-hESC
6
HEK293
6
IMR-90
6
LNCAP
6
Rh-4 cell
6
SGBS preadipocytes
6
T-cell acute lymphoblastic leukemia
6
T-helper 1 cell
6
bronchial epithelial cell
6
chondrocyte
6
fibroblast of lung
6
hESC cell
6
induced pluripotent stem cell
6
left kidney
6
neuroblastoma cell line
6
neutrophil
6
pancreatic delta cell
6
sigmoid colon
6
smooth muscle cell
6
testis
6
trophoblast cell
6
upper lobe of left lung
5
CD4-positive, alpha-beta memory T cell
5
Ewing sarcoma
5
GM06990
5
GM12864
5
GM12865
5
HAP-1
5
HCT-116 cell
5
HL-60
5
HT-29
5
MM.1S
5
OCI-LY7
5
PC-9
5
Peyer's patch
5
SK-N-MC
5
T cell
5
U937
5
acute myeloid leukemia
5
choroid plexus epithelial cell
5
lymphoblastoid cell line
5
mesendoderm
5
osteosarcoma
5
ovary
5
pancreatic alpha cell
5
prostate cancer cell line
4
22Rv1
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
B-lymphocyte
4
BE(2)-C
4
BJ cell
4
CD1c-positive myeloid dendritic cell
4
CD4-positive helper T cell
4
CMK
4
COLO205
4
Caco-2 cell
4
GM12873
4
GM12875
4
GM19240
4
GM23248
4
HAC cell
4
HBMEC cell
4
HS-SY-2 cell
4
HeLa-S3
4
Ishikawa
4
KARPAS-422 cell
4
LHCN-M2
4
LoVo cell
4
MDA-MB-231 cell
4
MG63
4
Mantle cell lymphoma
4
NCCIT cell
4
NHEK
4
NT2-D1 cell
4
PANC-1 cell
4
PC-3
4
RPMI8226
4
RS4-11 cell
4
RWPE1
4
SK-N-DZ
4
SK-N-SH
4
SK-N-SH_RA
4
SW480
4
T-47D cell
4
T-cell
4
T-helper 17 cell
4
U2OS
4
WERI-Rb-1
4
acute myeloid leukemia cell
4
cartilage tissue
4
caudate nucleus
4
coronary artery
4
diffuse large B-cell lymphoma
4
erythroid cell
4
esophageal squamous cell carcinoma
4
esophagus squamous epithelium
4
fibroblast of cardiac tissue
4
foreskin melanocyte
4
gastrocnemius medialis
4
heart right ventricle
4
hepatocyte
4
mammary gland epithelial cell
4
naive thymus-derived CD8-positive, alpha-beta T cell
4
psoas muscle
4
right renal pelvis
4
squamous cell lung carcinoma
4
substantia nigra
4
synovial sarcoma cell
4
tibial nerve
4
tracheal epithelial cell
4
triple-negative breast cancer
4
type I muscle cell
3
786-O cell
3
A-673 cell
3
Ammon's horn
3
BJAB cell
3
COLO-320 cell
3
D341 Med cell
3
DND-41 cell
3
Daoy
Life stage
1
embryonic
Date released
3
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
Software used
3
macs
r
1
abc
1
encode-ccres
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
assembly!
GRCh38
files.file_type!
bed bed9+
software_used.software.name!
r
Showing 6 of 6 results
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Download
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP