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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
target gene predictions
1
accessible chromatin
Annotation Category
2
Target gene links
1
cis-regulatory elements
Annotation type Category
2
snATAC-seq
1
ATAC-seq
1
DNase-seq
1
H3K27ac ChIP-Seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
cell line
Biosample term
15
CD14-positive monocyte
12
endothelial cell
11
adipocyte
11
pancreatic alpha cell
11
pancreatic beta cell
11
pancreatic delta cell
10
pituitary stalk
9
pancreatic acinar cell
9
pancreatic ductal cell
8
induced pluripotent stem cell
8
kidney
8
macrophage
7
dendritic cell
7
pancreatic stellate cell
6
fibroblast
6
skeletal muscle fiber
6
smooth muscle cell
5
Adaptive / Maladaptive / Repairing Fibroblast
5
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
5
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
5
Afferent / Efferent Arteriole Endothelial Cell
5
B Cell
5
CD8-positive, alpha-beta T cell
5
Classical Dendritic Cell
5
Connecting Tubule Cell
5
Connecting Tubule Intercalated Cell Type A
5
Connecting Tubule Principal Cell
5
Cortical Thick Ascending Limb Cell
5
Cycling Endothelial Cell
5
Cycling Epithelial Cell
5
Cycling T Cell
5
Cytotoxic T Cell
5
Degenerative Connecting Tubule Cell
5
Degenerative Connecting Tubule Cell / Principal Cell
5
Degenerative Cortical Thick Ascending Limb Cell
5
Degenerative Distal Convoluted Tubule Cell
5
Degenerative Intercalated Cell Type A
5
Degenerative Peritubular Capillary Endothelial Cell
5
Degenerative Principal Cell
5
Degenerative Proximal Tubule Epithelial Cell
5
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
5
Degenerative Vascular Smooth Muscle Cell
5
Descending Thin Limb Cell Type 1
5
Distal Convoluted Tubule Cell Type 1
5
Fibroblast
5
Glomerular Capillary Endothelial Cell
5
Intercalated Cell Type A
5
Intercalated Cell Type B
5
Lymphatic Endothelial Cell
5
M2 Macrophage
5
Medullary Thick Ascending Limb Cell
5
Mesangial Cell
5
Monocyte
5
Monocyte-derived Cell
5
Myofibroblast
5
Natural Killer T Cell
5
Natural Killer T Cell Type 1
5
Natural Killer T Cell Type 2
5
Non-Classical Monocyte
5
Parietal Epithelial Cell
5
Peritubular Capillary Endothelial Cell
5
Plasma Cell
5
Plasmacytoid Dendritic Cell
5
Podocyte
5
Principal Cell
5
Proximal Tubule Epithelial Cell Segment 1 and 2
5
Proximal Tubule Epithelial Cell Segment 3
5
Regulatory T Cell
5
Renin-positive Juxtaglomerular Granular Cell
5
T Cell
5
Transitional Principal-Intercalated Cell
5
Vascular Smooth Muscle Cell / Pericyte
5
mesenchymal stem cell
5
natural killer cell
5
pancreatic endothelial cell
4
cartilage tissue
4
liver
4
myofibroblast cell
4
pancreatic MUC5B+ductal cell
4
pancreatic alpha+beta cell
4
pancreatic cycling alpha cell
4
pancreatic gamma+epsilon cell
4
pancreatic macrophage cell
pancreatic mast cell
4
pancreatic polypeptide-secreting cell
4
type I muscle cell
4
type II muscle cell
3
Cycling Mononuclear Phagocyte
3
Mast Cell
3
T cell
3
basal cell
3
enterocyte
3
islet of Langerhans
3
keratinocyte
3
monocyte
3
pancreatic quiescent stellate cell
3
subcutaneous adipose tissue
2
B cell
2
BJAB cell
2
CD4-positive helper T cell
2
ESC derived cell line
2
EndoC_BH1
2
GM12878
2
H1-hESC
2
HepG2
2
Jurkat
2
K562
2
MCF 10A cell
2
Schwann cell
2
T-cell
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
activated CD8-positive, alpha-beta T cell
2
adrenal gland
2
articular chondrocyte
2
capillary endothelial cell
2
cardiac muscle cell
2
conventional dendritic cell
2
endothelial cell of umbilical vein
2
epithelial cell of esophagus
2
extracellular matrix secreting cell
2
fibroblast of lung
2
glial cell
2
goblet cell
2
hepatocyte
2
kidney distal convoluted tubule epithelial cell
2
leukocyte
2
mammary epithelial cell
2
megakaryocyte
2
memory B cell
2
naive B cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
natural killer cell mediated cytotoxicity
2
neural cell
2
non-classical monocyte
2
plasmacytoid dendritic cell
2
regulatory T cell
2
renal principal cell
2
skeletal muscle myoblast
2
skeletal muscle satellite cell
2
stellate neuron
2
stomach
2
trophoblast cell
2
type II pneumocyte
2
vascular associated smooth muscle cell
1
A549
1
A673
1
B cell, CD19-positive
1
B-1 B cell
1
B-2 B cell
1
CD34-PB
1
CD56-positive, CD161-positive immature natural killer cell
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
H7-hESC
1
H9
1
HAP-1
1
HCT-116 cell
1
HT-29
1
HeLa-S3
1
Human Mesenchymal Cell derived Adipocytes
1
Human Mesenchymal Cell derived Osteoblasts
1
IMR-90
1
KARPAS-422 cell
1
LNCAP
1
LoVo cell
1
MCF-7
1
MDA-MB-231 cell
1
MM.1S
1
NCCIT cell
1
OCI-LY7
1
PC-9
1
Panc1
1
Pancreatic islets
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
SK-N-SH
1
Satellite Cells, Skeletal Muscle
1
T-helper 17 cell
1
adipose tissue
1
alternatively activated macrophage
1
astrocyte
1
beige adipocyte
1
bipolar neuron
1
body of pancreas
1
breast epithelium
1
bronchial goblet cell
1
cardiac ventricle
1
caudate nucleus
1
cell
1
ciliated cell
1
cingulate gyrus
1
club cell
1
colonic mucosa
1
common myeloid progenitor, CD34-positive
1
coronary artery
1
cortical cell of adrenal gland
1
duodenal mucosa
Date released
2
January, 2021
1
May, 2021
Software used
1
abc
1
cicero
1
macs
Lab
AMP-T2D consortium
2
Kyle Gaulton, UCSD
1
Jesse Engreitz, Stanford University
Project
2
T1D
1
AMP
RFA
2
T1D
1
AMP
assembly!
GRCh38
biosample_term_name!
pancreatic mast cell
files.file_type!
bigBed bed9
lab.title!
AMP-T2D consortium
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
FileSet
DSR303OXY
released
Annotation file set
: enhancer-gene predicton of THP-1_monocyte-VanBortle2017 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR158NKH
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR234HXR
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D