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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
target gene predictions
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
4
DNase-seq
3
ChIP-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
5
hg19
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
44
CD8-positive, alpha-beta T cell
41
common myeloid progenitor, CD34-positive
27
B cell
27
CD14-positive monocyte
23
CD4-positive, alpha-beta memory T cell
16
regulatory T cell
15
CD8-positive, alpha-beta memory T cell
15
foreskin fibroblast
15
foreskin keratinocyte
15
natural killer cell
14
endothelial cell of umbilical vein
14
mononuclear cell
14
trophoblast cell
13
fibroblast of lung
13
mammary epithelial cell
12
T-helper 1 cell
12
endothelial cell
12
monocyte
12
skeletal muscle myoblast
11
T cell
11
keratinocyte
11
osteoblast
10
CD4-positive, alpha-beta T cell
10
T-helper 17 cell
10
T-helper 2 cell
10
bronchial epithelial cell
10
neurosphere
9
fibroblast of dermis
9
naive thymus-derived CD4-positive, alpha-beta T cell
9
neutrophil
8
dermis blood vessel endothelial cell
8
hepatocyte
8
mammary gland epithelial cell
pancreatic alpha cell
8
pancreatic beta cell
8
pancreatic delta cell
8
pancreatic ductal cell
7
epithelial cell of prostate
7
fibroblast
7
fibroblast of mammary gland
7
fibroblast of pulmonary artery
7
fibroblast of villous mesenchyme
7
macrophage
7
retinal pigment epithelial cell
6
CD1c-positive myeloid dendritic cell
6
T-cell
6
cardiac muscle cell
6
fibroblast of breast
6
fibroblast of cardiac tissue
6
kidney tubule cell
6
myoepithelial cell of mammary gland
6
naive T cell
6
peripheral blood mononuclear cell
6
pulmonary artery endothelial cell
6
smooth muscle cell
5
astrocyte
5
choroid plexus epithelial cell
5
epithelial cell of esophagus
5
epithelial cell of proximal tubule
5
foreskin melanocyte
5
glomerular visceral epithelial cell
5
mesenchymal stem cell
5
myofibroblast cell
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
renal cortical epithelial cell
5
skeletal muscle satellite cell
5
skin fibroblast
5
tracheal epithelial cell
4
acute myeloid leukemia cell
4
aortic adventitial fibroblast
4
astrocyte of the cerebellum
4
astrocyte of the hippocampus
4
cardiac fibroblast
4
dermis lymphatic vessel endothelial cell
4
erythroblast
4
fibroblast of peridontal ligament
4
glomerular endothelial cell
4
glutamatergic neuron
4
hepatic stellate cell
4
iris pigment epithelial cell
4
kidney epithelial cell
4
kidney glomerular epithelial cell
4
lung microvascular endothelial cell
4
memory B cell
4
non-pigmented ciliary epithelial cell
4
pancreatic acinar cell
4
pancreatic polypeptide-secreting cell
4
preadipocyte
4
renal epithelial cell
4
skeletal muscle cell
4
skeletal muscle fiber
4
smooth muscle cell of the brain vasculature
4
type I muscle cell
4
type II muscle cell
3
Ishikawa
3
Th1 cell
3
Th17 cell
3
activated CD4-positive, alpha-beta T cell
3
aortic endothelial cell
3
astrocyte of the spinal cord
3
basal cell
3
bone marrow cell
3
brain microvascular endothelial cell
3
enterocyte
3
erythroid cell
3
fibroblast of gingiva
3
fibroblast of the aortic adventitia
3
fibroblast of the conjunctiva
3
mast cell
3
megakaryocyte
3
mononuclear cell of bone marrow
3
myotube
3
neoplastic cell
3
pancreatic stellate cell
3
pericyte cell
3
peripheral blood stem cell
3
plasma cell
3
plasmacytoid dendritic cell
3
pre-B acute lymphoblastic leukemia cell
3
pulmonary interstitial fibroblast
3
stromal cell of bone marrow
2
cardiac fibroblast
2
Adipose stromal cell
2
B-lymphocyte
2
CD34-positive, CD38-negative hematopoietic stem cell
2
CD4-positive helper T cell
2
Rhabdoid Tumor of the Kidney
2
Schwann cell
2
T follicular helper cell
2
Th2 cell
2
activated CD8-positive, alpha-beta T cell
2
adipocyte
2
amnion mesenchymal stem cell
2
amniotic stem cell
2
brain pericyte
2
capillary endothelial cell
2
cardiac muscle myoblast
2
central memory CD8-positive, alpha-beta T cell
2
chronic lymphocytic leukemia cell
2
columnar chondrocyte
2
conventional dendritic cell
2
dermis microvascular lymphatic vessel endothelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
epidermal melanocyte
2
epithelial cell of amnion
2
erythroid progenitor cell
2
extracellular matrix secreting cell
2
gamma-delta T cell
2
goblet cell
2
head and neck squamous cell carcinoma
2
kidney capillary endothelial cell
2
leukemic stem cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mammary stem cell
2
mantle cell lymphoma cell
2
mature natural killer cell
2
mature neutrophil
2
memory T cell
2
memory regulatory T cell
2
meso-epithelial cell
2
naive regulatory T cell
2
natural killer cell mediated cytotoxicity
2
neuronal stem cell
2
non-classical monocyte
2
pancreatic endocrine cell
2
peripheral blood-derived erythroblast
2
primordial germ cell
2
prostate gland cancer cell
2
regular cardiac myocyte
2
renal proximal tubule cell
2
small cell ovarian carcinoma cell
2
somatic muscle myotube
2
stellate neuron
2
type II pneumocyte
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
acute myeloid leukemia
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
alveolar cell type II
1
amniotic epithelial cell
Organ
4
musculature of body
Life stage
3
unknown
Date released
2
September, 2022
1
February, 2021
1
May, 2020
Software used
2
r
1
deltasvm
1
encode-ccres
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
assembly!
GRCh38
biosample_term_name!
pancreatic alpha cell
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR404VRF
released
Annotation file set
: Candidate regulatory elements for BSS01572 skeletal muscle cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR722IWA
released
Annotation file set
: Target gene predictions for BSS01572 skeletal muscle cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR101OOW
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE skeletal muscle cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR592EHG
released
Annotation file set
: Genetic variants with deltaSVM predictions in skeletal muscle cell DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP