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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
4
hg19
GRCh38
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
52
heart
49
muscle of arm
45
brain
42
lung
41
muscle of back
40
large intestine
40
muscle of leg
40
placenta
40
stomach
39
left lung
37
kidney
35
small intestine
33
right lung
31
right kidney
29
renal cortex interstitium
28
renal pelvis
28
thymus
27
left kidney
24
adrenal gland
21
spinal cord
14
trophoblast cell
12
chorionic villus
12
muscle of trunk
10
neurosphere
9
left renal cortex interstitium
9
neural progenitor cell
9
retina
8
H9
8
left renal pelvis
8
right renal cortex interstitium
8
right renal pelvis
6
endodermal cell
6
eye
6
heart left ventricle
6
tongue
6
trophoblast
5
cardiac muscle cell
5
limb
5
liver
5
mesodermal cell
4
HEK293
4
chorion membrane
4
heart right ventricle
4
left cardiac atrium
4
neural cell
4
skin fibroblast
4
testis
3
ELF-1
3
H1-hESC
3
HUES48
3
HUES6
3
HUES64
3
IMR-90
3
UCSF-4
3
amnion
3
cardiac precursors (cardiac muscle cell)
3
ectodermal cell
3
femur
3
germinal matrix
3
hepatocyte
3
islet precursor cell
3
kidney capillary endothelial cell
3
mesenchymal stem cell
3
mesendoderm
3
neuron
3
ovary
3
smooth muscle cell
3
spleen
3
umbilical cord
2
AG04449 cell
2
AG04450 cell
2
ES-I3
2
H7-hESC
2
HEK293T
2
HTR-8/Svneo
2
amnion mesenchymal stem cell
2
amniotic stem cell
2
arm bone
2
cardiac mesoderm primordium
2
cardiac myoblast
2
cardiovascular progenitor cell
2
chorion
2
embryonic facial prominence
2
fibroblast of cardiac tissue
2
leg bone
2
neuroepithelial stem cell
2
neuronal stem cell
2
placental basal plate
2
skin of body
2
urinary bladder
1
AG04449
1
AG04450
1
H1
1
H7
1
aorta
1
aortic valve
1
cardiac fibroblast
1
ecto neural progenitor cell
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
forelimb muscle
1
hindlimb muscle
1
left leg bone
1
mid-neurogenesis radial glial cells
1
mitral valve
1
pulmonary valve
1
radial glial cell
1
right arm bone
1
right cardiac atrium
1
tricuspid valve
Organ
3
extraembryonic component
Life stage
3
embryonic
Date released
2
September, 2022
1
February, 2021
Software used
2
r
1
encode-ccres
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
assembly!
GRCh38
Showing 3 of 3 results
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Download
FileSet
DSR709JRG
released
Annotation file set
: Candidate regulatory elements for BSS01867 umbilical cord from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR561DSE
released
Annotation file set
: Target gene predictions for BSS01867 umbilical cord from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR470LKX
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE umbilical cord
Lab:
AMP-T2D consortium
Project:
AMP